Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele02g1208 | ATGGAGATGCAACAGCTTTTGAGCATGGGTTTTCCCGATGAGTTAGCAGCCCAAGCCCTAGCTGCTACTGGCGGCAAATCCACCATTAAAGCCACCGAATGGATCTTAAACCACGAAGCCACTTCTTCTAACTCAAACCCTTCTCCAGTTCAGCCCAAACTTGATCGCTTTTTTCAGTTTCAATCCAAACCGGTTTCTACAGTCACATCCTCACCACAAGCAATTCAACCAGAAGAACAAGAAGACGCAGATTTAGATTTAGAAGAATCAACCCCAAACGTTAATCCGTCTTCCAAACGTCTGAAATTTTCACCATCTAACTCCAAACCCACTTCTCCGGTCTTTCTGAATCATTTTCGTGGTCGCAAGAGTGCTGATAATGCTTCTAATGCCAAACCCCATGAGCCCTTATATGAGCGAATGCGTCCCAGAACCATTGATGATGTTATTGGTCAGGACCATTTGGTTGCTTCTAACTCCCTCCTTCGCTCCGCAATTAAACATGGCCGTCTTCCTTCCATCATCTTCTGGGGTCCTCCTGGTACAGGTAAGACGTCTATTGCTAAAGCCATTGTTAATTCCGCAAGTTCTTCTCAGAAACAACAAAGCCCCTCTTATCGCTTTGTTTCGTTATCTGCTGTGACTAGTGGTGTTAAAGATGTGAGAGATGCCGTTGATGAGGCTAGGAAATTGAGAGTTAAGTGTAATCAAAGAACTGTTCTTTTTGTGGATGAGGTTCACAGGTTTAACAAGTCTCAACAGGACTCTTTTTTGCCGGTTATTGAAGATGGAAGTATTGTCTTCGTTGGGGCCACTACTGAAAACCCTTCTTTCCATTTGATTACGCCATTGCTGTCTCGTTGTCGTGTTCTCACCCTAAACCCCTTGAAACCCCACCATGTTGAGATGATTCTAAAGAGGGCTGTGAATAATCTGGACAAAGGATTGGTGCAAAGCATTGGTTTTCAAGTTGATGTTGCTGAAGATGTAATTAGTTTGATAGCCAACACTTGTGATGGTGATTCTCGGGTGGCATTGAATTCATTGGAGATTGCAGCTGTGACAGCAGCTGCTCGGTCACAAGATGATAAGAAATCCAAGGATGTCAAAGAAATAGAAGGCATGGATGGTGAGATAAACCAAGAAAATAGAGCTGGTCCGTTTCTTAATATTATTACCCTGGATGATGCAAAAGAGGCGCTTCAGTGCAAGCACCTTGCTTATGATAAAGCTGGGGAACAGCACTATAATCTAATTAGCGCGCTGCACAAATCAATGAGGGGAAGTGATGCTGATGCGGCAATTTATTGGCTGGCAAGAATGTTGGAAGGAGGTGAAGAGCCTCTATACATTGCACGGAGATTGATAAGGTTTGCGAGTGAAGACATTGGGTTGGCTGATCCATCTGCTCTGAATCAGGCTGTTTGCTGTTACCAAGCCTGCCACTTCTTGGGCATGCCTGAGTGCAATGTGATTCTTGCACAGTGTGTTGCTTATTTGGCCTTAGCTCCTAAGTCGATTGCTGTATATCGAGCAATACAAGCTGCTCAGAAGGTTGTCAAGGAATCAGCTGGACAGAATGAGGGAGTGCCTCTTCATCTAAGAAATGCACCAACTAAACTAATGAAGGAAATTGGCTACGGGAAGGGATACATATATACTCCTGATAATCCCACTTTGACCCAGAACTATTTACCACCTTCACTAAATGGGTACAAGTTCCTTGATTGGCCTGACAGGAATACCTCTGACAGACAAAAATGTTAA | 1767 | 0.4392 | MEMQQLLSMGFPDELAAQALAATGGKSTIKATEWILNHEATSSNSNPSPVQPKLDRFFQFQSKPVSTVTSSPQAIQPEEQEDADLDLEESTPNVNPSSKRLKFSPSNSKPTSPVFLNHFRGRKSADNASNAKPHEPLYERMRPRTIDDVIGQDHLVASNSLLRSAIKHGRLPSIIFWGPPGTGKTSIAKAIVNSASSSQKQQSPSYRFVSLSAVTSGVKDVRDAVDEARKLRVKCNQRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLKPHHVEMILKRAVNNLDKGLVQSIGFQVDVAEDVISLIANTCDGDSRVALNSLEIAAVTAAARSQDDKKSKDVKEIEGMDGEINQENRAGPFLNIITLDDAKEALQCKHLAYDKAGEQHYNLISALHKSMRGSDADAAIYWLARMLEGGEEPLYIARRLIRFASEDIGLADPSALNQAVCCYQACHFLGMPECNVILAQCVAYLALAPKSIAVYRAIQAAQKVVKESAGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDNPTLTQNYLPPSLNGYKFLDWPDRNTSDRQKC | 588 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele02g1208 | 588 | SMART | AAA_5 | 170 | 296 | IPR003593 | - | |
| Lele02g1208 | 588 | Gene3D | - | 296 | 371 | - | - | |
| Lele02g1208 | 588 | CDD | AAA | 150 | 289 | - | - | |
| Lele02g1208 | 588 | SUPERFAMILY | UBA-like | 3 | 43 | IPR009060 | GO:0005515 | |
| Lele02g1208 | 588 | CDD | HLD_clamp_RarA | 296 | 402 | - | - | |
| Lele02g1208 | 588 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 132 | 368 | IPR027417 | - | |
| Lele02g1208 | 588 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 412 | 582 | IPR008921 | GO:0003677|GO:0006260 | |
| Lele02g1208 | 588 | Pfam | ATPase family associated with various cellular activities (AAA) | 174 | 290 | IPR003959 | GO:0005524|GO:0016887 | |
| Lele02g1208 | 588 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 1 | 38 | IPR015940 | - | |
| Lele02g1208 | 588 | FunFam | AAA-type ATPase family protein | 296 | 371 | - | - | |
| Lele02g1208 | 588 | Pfam | MgsA AAA+ ATPase C terminal | 428 | 580 | IPR021886 | - | |
| Lele02g1208 | 588 | PANTHER | WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER | 1 | 586 | - | - | |
| Lele02g1208 | 588 | Pfam | AAA C-terminal domain | 323 | 427 | IPR032423 | - | |
| Lele02g1208 | 588 | Gene3D | - | 506 | 587 | - | - | |
| Lele02g1208 | 588 | Gene3D | - | 2 | 50 | - | - | |
| Lele02g1208 | 588 | Gene3D | - | 124 | 294 | IPR027417 | - | |
| Lele02g1208 | 588 | MobiDBLite | consensus disorder prediction | 63 | 138 | - | - | |
| Lele02g1208 | 588 | SMART | uba_6 | 1 | 37 | IPR015940 | - | |
| Lele02g1208 | 588 | Pfam | UBA/TS-N domain | 4 | 35 | IPR015940 | - | |
| Lele02g1208 | 588 | FunFam | Putative AAA family ATPase | 402 | 505 | - | - | |
| Lele02g1208 | 588 | Gene3D | - | 402 | 505 | - | - | |
| Lele02g1208 | 588 | FunFam | Replication-associated recombination protein A | 127 | 295 | - | - | |
| Lele02g1208 | 588 | MobiDBLite | consensus disorder prediction | 90 | 114 | - | - | |
| Lele02g1208 | 588 | MobiDBLite | consensus disorder prediction | 63 | 77 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele02g1208 | Lele-ChrLele02 | 13540661 | 13542427 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele02g1208 | 134 | 350 | Core DNA Replication Machinery Family | AT1G63160 | 26.364 | 5.35e-12 | 65.5 |