Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1200 ATGTGTTACATGACTAGGACAATAAGTGACATGGTTTATGAGGTATCTGCTATATGTGATGATGACAAGAACAACTCTAAGATGTGGTTGGCTAGGTGTCTTGTGACGGATGACATGGCATGTGACGTCAAGGCTGCCAGCAGGGAATTTAATCAAGAAGAAGAAGGTGAAGATAAGGAAAGAAAGAGATCCAAGAAAAAATTTGAGAATCACGTCTCTGGATTGATTGAAGAAATGACGAGAAGGAAGATAGCGATAAAGAAGATCGAGAACGTAGCAGCGAGGCATGTGGCTTTCTCAAAGAGAAGGAAAGGTCTATTCAAGAAGGCCATGGAGCTCTCTACTCTCTGTGATGCTGAGATTGCACTCTTAGTCTTTTCTGCTTCTGGCAAACTCTTTGATTATGCTAGTACAAGCATGAGGCAGGTGATTGAAAGGAGAAACTTGTACTCAGATCTGAACCTTGACAAATCACAACAGCCATCTCTTGAACTGCAGGTAGCAGGTGATCATTTTAAGCTGAACTTGGAGCTGAAAGAGAAGACTCGTGAAATAAGGCAGCTCAATGGAGAAGAACTACAAGGATTGACCTTAAGAGATCTAAGGAAACTAGAAAATTTACTTAACACAAGTTTGAATTGCATTTCAAGAGCAAAGGATGAAGCACATCAGCAAGAGATCAGTATTCTCAAGAGCAAGGAAGCCAAACTCATGGAGGAAAACCAGAGACTAAACCAGGAAATTAAACTAATGGAAGAAAACCAGAGATTGCAACAGGTTCAAAGGCTTGAGCATGACCAATGCCAGACATTGGACACCTCTCTGAGAATGAGGTTAGCATCATATGAGTTTCAGAATTTATTTATTTATTTTTGGTGA 879 0.4039 MCYMTRTISDMVYEVSAICDDDKNNSKMWLARCLVTDDMACDVKAASREFNQEEEGEDKERKRSKKKFENHVSGLIEEMTRRKIAIKKIENVAARHVAFSKRRKGLFKKAMELSTLCDAEIALLVFSASGKLFDYASTSMRQVIERRNLYSDLNLDKSQQPSLELQVAGDHFKLNLELKEKTREIRQLNGEELQGLTLRDLRKLENLLNTSLNCISRAKDEAHQQEISILKSKEAKLMEENQRLNQEIKLMEENQRLQQVQRLEHDQCQTLDTSLRMRLASYEFQNLFIYFW 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1200 292 PANTHER SERUM RESPONSE FACTOR HOMOLOG 81 246 - -
Lele02g1200 292 Coils Coil 171 191 - -
Lele02g1200 292 CDD MADS_MEF2_like 81 152 IPR033896 GO:0000977|GO:0045944
Lele02g1200 292 Gene3D - 91 159 IPR036879 GO:0003677|GO:0046983
Lele02g1200 292 PRINTS MADS domain signature 101 116 IPR002100 GO:0003677|GO:0046983
Lele02g1200 292 PRINTS MADS domain signature 116 137 IPR002100 GO:0003677|GO:0046983
Lele02g1200 292 PRINTS MADS domain signature 81 101 IPR002100 GO:0003677|GO:0046983
Lele02g1200 292 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 88 135 IPR002100 GO:0003677|GO:0046983
Lele02g1200 292 Pfam K-box region 171 248 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele02g1200 292 SMART madsneu2 79 138 IPR002100 GO:0003677|GO:0046983
Lele02g1200 292 Coils Coil 227 261 - -
Lele02g1200 292 SUPERFAMILY SRF-like 80 160 IPR036879 GO:0003677|GO:0046983
Lele02g1200 292 ProSiteProfiles MADS-box domain profile. 79 139 IPR002100 GO:0003677|GO:0046983
Lele02g1200 292 ProSiteProfiles K-box domain profile. 164 257 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1200 Lele-ChrLele02 12180559 12200105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1200 79 257 MADS-box Gene Family AT2G22540 51.648 3.15e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele02g1200 K-box 5.1e-12 No_clan