Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1162 ATGTCGAATCCTAAGCACAAGCGTGAGTCCCTGACAGCCAGTGCGGTCGATTCGTCCCTTCGGTATCACCCAGCGAATGTTGCGGAATCGGGTGGAAGGTCCTCAATCAGAACCACGAAGTCTTACCCACCGGCGAACGCTCTCTATGAGGACCTCGCCAGCAGTTCGGACCTTTTCTGGAGAAATCTTCAGGACTTTCACAAATACTTGGGCACCAAATTGAAAGTTCCTACTATAGGGGGAAAGCCACTAGATCTATATCGCCTTTTTATTGAAGTTTCTTCTCGTGGTGGACTTGAAAAGGTTATTGGAGATCGTAAATGGAAGGAAGTGATTATAGTCTTCAAATTCCCGGAAACCGTAGCCAGTGCATCATTTGCATTGCGCAAATACTATCAATCATTGCTTTATGATTTTGAGCAGGTTTATTATTTTCGGAAGCAAGTCCCTTCTCTTTCATGGCCTGATTCTGGTAGCAGGAGCATATTGAGCTCAAAGGAAGGGGCTGCTTTGAATGATTTACCAGTTAGTACACTCGAGCAGAAGCTTGGCTCTTTGGTGCCTGGTACCATCGATTTGAAATTTGATGGTGGATATGTGGTCACTGTGAATCTGGGTTCTGACCAGTTAAAAGGTGTGCTGTATCATGTTCCTCTCAATGCATCCCACAGTTCTACATCCATACCGGTTTCTCTGAATCGAAAGAGATCAAGGTTGGGTTCGCATGATCCATCACGGCCCAAATCAAACAGGAGTGGATACAATTTCTTCTTTGCTGAACACTATGCCAGGCTGAAGCCTTCTTACTATGGGCAAGAGAGAGCAATTAGTAAGAAGATTGGGTTTCTATGGAACCATCTCACTGAAGCAGAAAGACAGGTTTATCAGGAGAAAGGGAGGAGAGATAAGGAGAGATACAGGACTGAGATGCAGGAATACAAAGCGTCCAATAATGTGACTCAGTAG 966 0.4503 MSNPKHKRESLTASAVDSSLRYHPANVAESGGRSSIRTTKSYPPANALYEDLASSSDLFWRNLQDFHKYLGTKLKVPTIGGKPLDLYRLFIEVSSRGGLEKVIGDRKWKEVIIVFKFPETVASASFALRKYYQSLLYDFEQVYYFRKQVPSLSWPDSGSRSILSSKEGAALNDLPVSTLEQKLGSLVPGTIDLKFDGGYVVTVNLGSDQLKGVLYHVPLNASHSSTSIPVSLNRKRSRLGSHDPSRPKSNRSGYNFFFAEHYARLKPSYYGQERAISKKIGFLWNHLTEAERQVYQEKGRRDKERYRTEMQEYKASNNVTQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1162 321 Gene3D High mobility group box domain 232 321 IPR036910 -
Lele02g1162 321 SMART hmgende2 246 315 IPR009071 -
Lele02g1162 321 CDD ARID_HMGB9-like 55 140 IPR045303 GO:0003677
Lele02g1162 321 Pfam HMG (high mobility group) box 247 314 IPR009071 -
Lele02g1162 321 SUPERFAMILY HMG-box 235 316 IPR036910 -
Lele02g1162 321 MobiDBLite consensus disorder prediction 299 321 - -
Lele02g1162 321 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 34 317 - -
Lele02g1162 321 SMART ARID_2 50 140 - -
Lele02g1162 321 SUPERFAMILY ARID-like 53 154 IPR036431 GO:0003677
Lele02g1162 321 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 247 314 IPR009071 -
Lele02g1162 321 CDD HMGB-UBF_HMG-box 247 311 - -
Lele02g1162 321 SMART bright_3 54 145 IPR001606 GO:0003677
Lele02g1162 321 MobiDBLite consensus disorder prediction 225 250 - -
Lele02g1162 321 Pfam ARID/BRIGHT DNA binding domain 57 140 IPR001606 GO:0003677
Lele02g1162 321 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Lele02g1162 321 Gene3D - 34 153 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1162 Lele-ChrLele02 8007399 8035486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1162 47 317 ARID Transcription Factor Family AT3G13350 52.113 4.54e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele02g1162 ARID 3.3e-19 CL0123