Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1126 ATGACAATGGGGGACGCCGAGTCATTCGCAGCAGCATTCCCATTTGATAGAGCTGTCGAACAGGCAATTGTATCTATAAAGAAAGGTGCATACTTACTCAAGTGTGGACATAGAGGAAAGCCCAAGCTCTGCCTTTTTAGACTTTCTCTAGATGAGAAAGCGTTGATTTGGTGTTCTGGGCAAAAGGAAAAGCATTTGCAACTGAGTGAAGTTACAAGAATTATTCAAGAGCAGGGAGATATGAGGTCCCAGAGACAAAGCCAACCTGAAAGAGATTGCCATTCATTTTCACTAATCTATGCAAGTGGCGAGCGCTCACTTGATTTGATATGCAAAGACAAAGCACAAGCCACTTCTTGGTTAGTGGGATTGAGAGCTCTGATATCCAGGCCCCAGCATCCAAGACCGTTAAGTAGTTTAAGGACCCGTAAAGGAGTGCAGAGTTGTGTAAATAGTCCAGCTGGGATCTTTCGCAGAAAGAAAAATCTTGGTCTTCTGGAGGATACTGTTGAATTTGCTCAGGTACACAGCTTACATGCGAGTCCTAATTTCTCACTTTCAGAAAGGTGCTTTTCTGAGGGCTTATCAGATGCTTCTGATAGTATTTATTCTTTAGAGTCTTTCCCATACAATTCTCATAATTCTCGGATCATAATGGATATTAAAGTTCCGGGTTCCGCACATGTTGATCCAGATTTTTGCAATAAAAATGGTTCAATATATTCTGACAGAGAGTATGAGAAGAATTTGTCTTATTGGCGTCAGCCTCCTCCAACCTCTCCTCATGTAGGAAACAACAGTGTATTGAAGGATGTCATGGTATGGGGCGAAGAAATTGTACGAGGTGGTAATAAACATGATCATAGTACATTGCCAAAGTTACTAGAATCCACCGTGATGCTAGATGTACAGAATATAGCTTTAGGAGGAAAGCATGCTGTCTTAGTCACAAAACAAGGTGAAGTTTTCTGTTGGGGACAAGGGAAAGGCGGAAGGCTGGGGCACAAAATTGACATCGATGTTAGTTCTCCGAAAATCGTTGATTCTCTTAATGGAATCCATATAAAATCTGTTGTCTGTGGCGAGTATCATACATGTGCTCTGACAGACACCGGTGTTGTGTATACATGGGGAAATGATGGTGGTTGTACAGATTCTGTAGGGTATGGCAAAGGTAGAAGTCAGTGGATACCGCATAAACTTTTGGTACCTTTAGATGGTATTAGTATCTCTAGTATTGCTTGTGGGGAATGGCATACTGCCGTTGTCTCTTGTTGTGGAAGACTATTTACATGTGGTGATGGTACTTTTGGAGTTCTAGGGCATGGAAATCTTCTGAGCATTTCTCAACCGAAAGAAGTTGAGTCTCTTAAAGGTAAGCGAGTGAGGTCCGTTGCTTGTGGATCATGGCACACGGCAGCTATTGCAGAAATTGTGACTCCCCATTGTAGATACAGTAGTTCTTGTAAGCTGTTTACCTGGGGCGATGGAGATGGTGGGCGGCTTGGTCATGCTGATGATGGAAGGAAGCTTTTTCCAACATGTGTTACACAACTTGTAGATTATGATTTTGTTGAAGTATGTTGTGGAATAATGTTGACCGTTGCGCTTACTAATTTGGGTAAAGTTTTCACCATGGGAAGTAAGGTTTATGGACAGCTAGGAAACTCTCATGCCAAGGATAAGACTGTGAATCTTGTCGAAGGACACTTGAAACAGGACTTTGTTAAGCAGATATCGTGTGGTTCGTATCATGTGGCTGCGTTGACATCTTCGGGCAGTGTCTATACATGGGGCAAGGGAACACATGGACAGTTAGGGTTGGGTGATACTGAAGACAGATACTCGCCTTGTTTCGTCGAGGCACTAAAAGATTGGCAGATAGAGAGTATTGCTTGTGGTTCAAGCTTCACTGCTGCAATTTGTTTACACAAACCTGTTTCTATTGTTGACCAGTCAGCTTGTAGCAGTTGTGAGCTTCCATTTGGCTTCAGAAGAAAGAGGCATAACTGCTATAACTGTGGTCTTCTCTTTTGCAATTCATGTAGCACTAACAAAGTTACACATGCATCTCTAGCCCCGATTAGGAACAAGGGTTTTCGGGTTTGTGATCTTTGCTTTCGTAAATGCCAAGGAATTACTCACTACTCACCTAAGGTATCAAAGTTGCAAAATCATAACACTATGCAGCAACCGAAGCGCTGGAATAAATTTCCTTATCTGACAGAAGATGAAGGGGAAACAGCAGTATCATCAGGTCCTCTGTCGTCTTTCAGTCAATCGTGCTACATGAAAAGCATGCCTAGCGGAAGGAAGGACTGGAAAAATCAACTAGAAAGCCAGAAACATGTAGAAAACTTCTCTTCAGTGTTGTTGGGTGGGGTGCCACAATGGGGGAAAGTTTCCTGCCCTGATAGATTTAAAACGAATTGTACAGAAAATTCTTTCATGCATGTTTCTTTGTTGAAAAATAAATTAGCTTCTTCTAATCCATTGAGACTAGAATCTACAGTATCCAGGATCCATAACGCAGAGAAAGATATGCCGAAGTCTGAGAAAGTACTTGTAGAAGAAGTTCATAGGCTGAGAGCTACGGCTGGGAAGCTTGAAGAGCAGTGTAAGCTCCAAAACTGTATGTTACAAGAATGTCAGCAAAAGATCGAGAAGAGCTTGTCGCTGGCGAGGGAGGAAGCTGCTAAATGTAGAGCTGCAAAAGAGGTCATAAAAGTCCTGACGTCAAAACTTCAAACAATATCAGAAAAAGACGATGCTGTACAAGAAGGAAAGATCGGGGTGAACAAATGCGTGCCTTGTCTTTCGTCCGTGATCACGGATGTGGATACTCCGAAAGATTGCAACTTGGACATTCAATCTGATTCTTCTCCTATAGTGTTCTCTGACAAATTAAGATCCAAAGTTGGGAGAAGCAAATTCCTCCAAAGTGGTAAATCGAGTGAGGATTCTCAGGTATCTCAGCAAGATGGTGTTAACAAGGGATCAAATAATGAATGGATAGAACAGTACGAACCCGGCGTGTACATCACTCTTACTTCCTTACCATGTGGACAAATTGGCCTTAAAAGAGTCAGATTCAGCAGGAAACGATTCTCTGAGAAAGAAGCAGAGCAGTGGTGGGAAGAGAATCGAGCAAGAGTGTGCAGTGATTATGGGGTGGAAGGATATAGTAACAGCAGCCAAACTCAAGTGTAA 3210 0.424 MTMGDAESFAAAFPFDRAVEQAIVSIKKGAYLLKCGHRGKPKLCLFRLSLDEKALIWCSGQKEKHLQLSEVTRIIQEQGDMRSQRQSQPERDCHSFSLIYASGERSLDLICKDKAQATSWLVGLRALISRPQHPRPLSSLRTRKGVQSCVNSPAGIFRRKKNLGLLEDTVEFAQVHSLHASPNFSLSERCFSEGLSDASDSIYSLESFPYNSHNSRIIMDIKVPGSAHVDPDFCNKNGSIYSDREYEKNLSYWRQPPPTSPHVGNNSVLKDVMVWGEEIVRGGNKHDHSTLPKLLESTVMLDVQNIALGGKHAVLVTKQGEVFCWGQGKGGRLGHKIDIDVSSPKIVDSLNGIHIKSVVCGEYHTCALTDTGVVYTWGNDGGCTDSVGYGKGRSQWIPHKLLVPLDGISISSIACGEWHTAVVSCCGRLFTCGDGTFGVLGHGNLLSISQPKEVESLKGKRVRSVACGSWHTAAIAEIVTPHCRYSSSCKLFTWGDGDGGRLGHADDGRKLFPTCVTQLVDYDFVEVCCGIMLTVALTNLGKVFTMGSKVYGQLGNSHAKDKTVNLVEGHLKQDFVKQISCGSYHVAALTSSGSVYTWGKGTHGQLGLGDTEDRYSPCFVEALKDWQIESIACGSSFTAAICLHKPVSIVDQSACSSCELPFGFRRKRHNCYNCGLLFCNSCSTNKVTHASLAPIRNKGFRVCDLCFRKCQGITHYSPKVSKLQNHNTMQQPKRWNKFPYLTEDEGETAVSSGPLSSFSQSCYMKSMPSGRKDWKNQLESQKHVENFSSVLLGGVPQWGKVSCPDRFKTNCTENSFMHVSLLKNKLASSNPLRLESTVSRIHNAEKDMPKSEKVLVEEVHRLRATAGKLEEQCKLQNCMLQECQQKIEKSLSLAREEAAKCRAAKEVIKVLTSKLQTISEKDDAVQEGKIGVNKCVPCLSSVITDVDTPKDCNLDIQSDSSPIVFSDKLRSKVGRSKFLQSGKSSEDSQVSQQDGVNKGSNNEWIEQYEPGVYITLTSLPCGQIGLKRVRFSRKRFSEKEAEQWWEENRARVCSDYGVEGYSNSSQTQV 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1126 1069 SUPERFAMILY RCC1/BLIP-II 272 645 IPR009091 -
Lele02g1126 1069 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 413 423 IPR000408 -
Lele02g1126 1069 Gene3D - 18 134 IPR011993 -
Lele02g1126 1069 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 489 540 IPR000408 -
Lele02g1126 1069 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 372 426 IPR000408 -
Lele02g1126 1069 SUPERFAMILY FYVE/PHD zinc finger 652 718 IPR011011 -
Lele02g1126 1069 Pfam Regulator of chromosome condensation (RCC1) repeat 541 589 IPR000408 -
Lele02g1126 1069 Pfam Regulator of chromosome condensation (RCC1) repeat 592 641 IPR000408 -
Lele02g1126 1069 Pfam Regulator of chromosome condensation (RCC1) repeat 427 475 IPR000408 -
Lele02g1126 1069 Pfam Regulator of chromosome condensation (RCC1) repeat 320 368 IPR000408 -
Lele02g1126 1069 Pfam Regulator of chromosome condensation (RCC1) repeat 491 537 IPR000408 -
Lele02g1126 1069 PRINTS Chromosome condensation regulator RCC1 signature 413 429 IPR000408 -
Lele02g1126 1069 PRINTS Chromosome condensation regulator RCC1 signature 429 443 IPR000408 -
Lele02g1126 1069 PRINTS Chromosome condensation regulator RCC1 signature 588 609 IPR000408 -
Lele02g1126 1069 PRINTS Chromosome condensation regulator RCC1 signature 303 316 IPR000408 -
Lele02g1126 1069 PRINTS Chromosome condensation regulator RCC1 signature 322 338 IPR000408 -
Lele02g1126 1069 PRINTS Chromosome condensation regulator RCC1 signature 372 388 IPR000408 -
Lele02g1126 1069 PRINTS Chromosome condensation regulator RCC1 signature 530 548 IPR000408 -
Lele02g1126 1069 Pfam Transcription factor regulating root and shoot growth via Pin3 1002 1056 IPR013591 -
Lele02g1126 1069 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 593 644 IPR000408 -
Lele02g1126 1069 Gene3D - 247 384 IPR009091 -
Lele02g1126 1069 Gene3D - 385 481 IPR009091 -
Lele02g1126 1069 Gene3D - 482 647 IPR009091 -
Lele02g1126 1069 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 718 IPR013083 -
Lele02g1126 1069 MobiDBLite consensus disorder prediction 979 1001 - -
Lele02g1126 1069 CDD PH_PLC_plant-like 17 129 - -
Lele02g1126 1069 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 63 914 - -
Lele02g1126 1069 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 649 711 IPR017455 -
Lele02g1126 1069 SMART fyve_4 643 712 IPR000306 GO:0046872
Lele02g1126 1069 SUPERFAMILY PH domain-like 18 128 - -
Lele02g1126 1069 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 320 371 IPR000408 -
Lele02g1126 1069 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 465 475 IPR000408 -
Lele02g1126 1069 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 427 478 IPR000408 -
Lele02g1126 1069 Pfam Pleckstrin homology domain 20 128 IPR001849 -
Lele02g1126 1069 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 541 592 IPR000408 -
Lele02g1126 1069 Pfam FYVE zinc finger 652 711 IPR000306 GO:0046872
Lele02g1126 1069 ProSiteProfiles BRX domain profile. 1002 1057 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1126 Lele-ChrLele02 7212331 7218255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1126 1003 1062 Major Intrinsic Protein MIP AT1G31880 46.667 6.18e-12 66.6