Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1107 ATGACCACCAAAGGATGGTGGCACATGCCTTCTGTCACATCAGTCTATAATGTACAATCCAGATTTTCAAGTACGGATGATCCAATGGCTAAGCTTGGCTCTTGCCATTACTCTTACAGAGACGCTCCTCCTCTCTCTCTCTACTGCACACAGGTTCAGCGTTGGTCGGTACCCCCTTATAAGAGGCAAAGATTACTACAAGATTCTCTATCTTTAAAAGAAAGGAAAAGAAAAGTGAAGCTTGATATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACAAGAAGGAGGAGGAGGGGAGAAGAAATGCCTGAATTCCGAGTTGTGGCATGCATGCGCGGGTCCTCTCGTGTCCCTACCAAATGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCACAGCGAGCAGGTTGCAGCCACAACTAACAGAGAACTTGATGGGCACATACCCAATTACCCGAGCTTGCCGCCCCAGTTAATTTGCCAACTTCATAATGTCACAATGCATGCTGATGTTGAAACAGATGAAGTATATGCTCAAATGACACTTCAGCCATTGACTCCGCAAGAGCAAAAGGAAACATTTCTTCCTTTGGAATTGGGCATTCCGAGCAAACAGCCCTCAAATTATTTTTGCAAGACATTAACAGCAAGTGACACCAGCACACATGGAGGGTTTTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTACCCCCACTGGATTTCTCACAGCAGCCACCAGCACAAGAACTAATTGCTAGGGACCTCCATGATGTTGAGTGGAAGTTCAGACACATTTTTCGAGGACAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTGTATTTGTTAGTGCCAAGAGACTTGTGGCCGGAGATTCTGTGCTATTTATATCGAATGAAAAGAATCAGCTACTTTTAGGAATACGACGTGCCAGTCGTCCCCAAACTGTCATGCCATCGTCAGTTCTTTCAACTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCTCATGCTGCTGCAACTAATAGCTGTTTTACAGTGTTCTATAATCCAAGGGCTAGTCCTTCTGAGTTTGTCATACCACTTTCAAAATATGTCAAGGCTGTGTACCATACACGTGTTTCAGTTGGCATGCGATTCAGGATGCTTTTTGAGACTGAGGAATCAAGTGTACGCAGGTACATGGGTACAATAACTGGCATAAGTGATCTGGATCCTGTTCGTTGGCCAAATTCTCATTGGCGATCTGTCAAGGTTGGTTGGGATGAATCGACAGCAGGAGATAGGCAGCCACGGGTTTCATTATGGGAAATTGAGCCTTTGACAACGTTCCCGATGTATCCATCACTATTCCCCCTCAGATTGAAGCGGCCATGGCATCCTGGCTCTTCATCTTTGCATGATGGAAGAGATGATGCAGGGCTGATGTGGCTGAGAGGTGGACCTGGAGATCAAGGTCTCAACTCCCTCAATTTTCAAGGCGGTGGTTTGTTGCCGTGGATGCAACCGAGACTAGATGCGACTTTGCTAGGAAATGACCATAATCAACAGTATCAAGCCATGTTAGCAGCTGGTTTGCAGAACCTAGGGAGTGGAGATCTCTTGCGTCAACAAATGATGCATTTGCAACCACCATTCCATTATCTTCAACAACTGGGAAACCATAATTCGCTGCAGCTTCAGCAGCCACATCAAGCAATTCAGCAATCAATGAGTTATAATATCCTTCAGCCACAAACTCAAGTGTTGGCAGAGAACTTGTCTCAGCACCTCCTTCAGAAACCACATAACAATCAAGAAGACCAAGCGCAGCCGCAGCAACCGCAGAATAATTATCATGATGCATTTTTTATTCAGAGTGATCAGCTCCCACAGAGGCAACACTCCCATGCTCCTTCGCCTTCATATTCAAAACCTGATTTCTTCGATTCGATCATAAAGTTCTCATCGGTTTCCCCTGGACAGAATATGCTCAGTTCACTTTGTCCTGAAGGGAGTAGCAATCTTTTCAGCTTACCAAGAAGCAGCCAGCCCACACTGACTGAACAATTGGGCCAACAACAATCATGGAGTCCGAAGTATGCGCCTGTGCAGGTGAGTGCTGCCTTTGGTAACTCAATGTCACACTCGCAATATACTGAGAAAGATTCTGCACCAGTGCCATCACATTGTACTTCAGATGCCCAGAATCCTACTCTCTTTGGGGTTAATATTGATTCATCTGGATTTCTTCTCCCCACCACTGTCCCGGGCTATTCAACTTCCTCGGTTGGTACTGATGCATCAACCATGGCATTAGGGGTCACTGGGTTCCAGGGTTCTCTGTATAATTGTGTGCAAGATTCTGCGGAGTTAATTCAGAGTTCAGGGCAAGTTGACCCTCAAAACCAAACTCAGACATTTGTCAAGGTCTACAAATCAGGTTCGGTTGGGCGCTCACTTGACATCTCGCGGTTCAGCAGCTATCATGAGCTGAGAGAGGAGTTGGCCCAAATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGATAGGGAGAATGATGTTCTTCTCCTTGGAGATGACCCGTGGGAATCTTTCGTCAATAATGTTTGGTACATCAAGATACTCTCACCTGAGGATATTATGAAGATGGGCGAACAATCGGTGGAATCATCGCTTGGTCCGAGCGCGGGACAAAGGATGAACAGCAGCGCTGCGGAATCTCAGGACCTTTCTGGCTTTCCATCGATGGGCTCGCTTGAATACTGA 2787 0.4647 MTTKGWWHMPSVTSVYNVQSRFSSTDDPMAKLGSCHYSYRDAPPLSLYCTQVQRWSVPPYKRQRLLQDSLSLKERKRKVKLDMKLSTSGLGQQGQEGGGGEKKCLNSELWHACAGPLVSLPNAGTRVVYFPQGHSEQVAATTNRELDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKETFLPLELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVLPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFISNEKNQLLLGIRRASRPQTVMPSSVLSTDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGRDDAGLMWLRGGPGDQGLNSLNFQGGGLLPWMQPRLDATLLGNDHNQQYQAMLAAGLQNLGSGDLLRQQMMHLQPPFHYLQQLGNHNSLQLQQPHQAIQQSMSYNILQPQTQVLAENLSQHLLQKPHNNQEDQAQPQQPQNNYHDAFFIQSDQLPQRQHSHAPSPSYSKPDFFDSIIKFSSVSPGQNMLSSLCPEGSSNLFSLPRSSQPTLTEQLGQQQSWSPKYAPVQVSAAFGNSMSHSQYTEKDSAPVPSHCTSDAQNPTLFGVNIDSSGFLLPTTVPGYSTSSVGTDASTMALGVTGFQGSLYNCVQDSAELIQSSGQVDPQNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIMKMGEQSVESSLGPSAGQRMNSSAAESQDLSGFPSMGSLEY 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1107 928 ProSiteProfiles B3 DNA-binding domain profile. 212 314 IPR003340 GO:0003677
Lele02g1107 928 SMART B3_2 212 314 IPR003340 GO:0003677
Lele02g1107 928 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 101 891 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele02g1107 928 Pfam B3 DNA binding domain 212 313 IPR003340 GO:0003677
Lele02g1107 928 Gene3D - 210 313 IPR015300 -
Lele02g1107 928 ProSiteProfiles PB1 domain profile. 802 886 IPR000270 GO:0005515
Lele02g1107 928 MobiDBLite consensus disorder prediction 892 928 - -
Lele02g1107 928 Pfam AUX/IAA family 798 888 IPR033389 -
Lele02g1107 928 CDD B3_DNA 211 312 IPR003340 GO:0003677
Lele02g1107 928 SUPERFAMILY CAD & PB1 domains 794 876 - -
Lele02g1107 928 MobiDBLite consensus disorder prediction 895 921 - -
Lele02g1107 928 FunFam Auxin response factor 797 891 - -
Lele02g1107 928 Pfam Auxin response factor 338 421 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele02g1107 928 Gene3D - 376 448 - -
Lele02g1107 928 FunFam Auxin response factor 376 448 - -
Lele02g1107 928 FunFam Auxin response factor 210 314 - -
Lele02g1107 928 MobiDBLite consensus disorder prediction 672 694 - -
Lele02g1107 928 Gene3D - 798 891 - -
Lele02g1107 928 SUPERFAMILY DNA-binding pseudobarrel domain 196 341 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1107 Lele-ChrLele02 7044094 7050949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1107 182 892 B3 DNA Binding Superfamily AT5G37020 68.465 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele02g1107 AUX_IAA 5.2e-08 CL0072