Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1086 ATGGCAGCCTCGCCCATGGTCATGGACTCTAAGCCATCTTCAGAACTACCTCCTTTTCTGCCCTCGACGAGATCCGATTACCTTCAAGGTTTCGGCGATGGAACCTCTGACGAAGAGGATCTCTACAGTCGCCTTAAGTCGCTCCAGCGCCAGTTGGAATTCATTGACATTCAGGAAGAATACGTCAAGGATGAACAGAAGAATCTAAAGCGCGAGCTCCTCCGAGCCCAGGAAGAGGTCAAGAGGATCCAGTCTGTGCCGTTAGTCATCGGCCAGTTCATGGAGATGGTGGACCAGAATAATGGTATCGTTGGCTCTACGACAGGATCAAATTACTATGTTCGTATTCTTAGTACCATCAACCGCGAGCTTTTGAAGCCCTCGGCATCCGTCGCTCTCCACCGCCACTCTAATGCGCTTGTGGATGTATTGCCGCCTGAGGCCGACTCCAGTATCTCGCTCCTGAGTCAGTCAGAGAAGCCTGATGTCACTTATAATCAATTTATTCTTATTGTGTGGAAACTAGAGCTGAGACTATCAGTAAACCTCTATCCCATTGCTTGGTCAGTTATCTTTAAGCCCGAAAGGGAAGTTGTAGCTTGGGCTGCTCTGAAATCTGAAATATCAATTACAGCCGCAGACGTTGCAAGAAATGCATTTTGTATTACACTTGTTAGACTTTTTAGCATGTGCACTATGGTCTTCTTAAGAGTTGTTGGGTCTGAATTTGTGCAGAAGTATCTTGGCGAGGGTCCAAGGATGGTCCGTGATGTTTTCCGTCTTGCCAAAGAGAATGCTCCTGCAATTATATTTATCGATGAGGTTGATGCAATAGCTACTGCTCGATTTGATGCCCAAACTGGAGCAGATAGAGAAGTACAGCGTATTCTCATGGAACTTCTGAATCAGGTTTGCACGGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTATGTCTCTCGTCCAGACAAAATTAGTGCTGCTGAGATAGCAGCTATTTGTCAAGAAGCAGGCATGCATGCTGTTCGTAAGAATAGGTATGTCATACTACCGAAGGACTTTGAGAAGGGATACCGGACAAACGTGAAGAAACCGGACACCGACTTTGAATTCTACAAGTGA 1128 0.4619 MAASPMVMDSKPSSELPPFLPSTRSDYLQGFGDGTSDEEDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNQFILIVWKLELRLSVNLYPIAWSVIFKPEREVVAWAALKSEISITAADVARNAFCITLVRLFSMCTMVFLRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1086 375 Gene3D - 229 302 IPR027417 -
Lele02g1086 375 Gene3D - 43 159 IPR012340 -
Lele02g1086 375 FunFam 26S protease regulatory subunit 6B 297 375 - -
Lele02g1086 375 Pfam Proteasomal ATPase OB C-terminal domain 90 145 IPR032501 -
Lele02g1086 375 MobiDBLite consensus disorder prediction 1 22 - -
Lele02g1086 375 FunFam 26S protease regulatory subunit 6B 45 155 - -
Lele02g1086 375 Pfam ATPase family associated with various cellular activities (AAA) 230 304 IPR003959 GO:0005524|GO:0016887
Lele02g1086 375 Gene3D - 303 375 - -
Lele02g1086 375 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 303 368 - -
Lele02g1086 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 361 IPR027417 -
Lele02g1086 375 Coils Coil 59 86 - -
Lele02g1086 375 CDD AAA 235 302 - -
Lele02g1086 375 Pfam AAA+ lid domain 315 357 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1086 Lele-ChrLele02 6847111 6850569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1086 223 330 Calmodulin-binding Proteins AT3G56690 36.697 1.94e-11 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1086 02 6847111 6850569 Lele03g1065 03 6173921 6177386 hybridization
Lele02g1086 02 6847111 6850569 Lele04g1071 04 6708793 6712752 hybridization