Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1079 ATGTCGTATGTTCCTCCGCACCTCAGGAGCTCCAGCTCCACTACTGTTGCCGCCAGAATTTCATCTCTCGCTATAGACACCAACGATCACAGCAAGCTTCCCAATTCTCACTTCCACACTTCTCTCACGCCTTCGTCATCCTCCAGCTTCTCTAATTACTCTCGCCGGAGCTTCGGAGCTCCTCCTCTATCCCGCACTCTCTCCATCCCCGACCCCGTGTTCCCGAACTGGCAACCTTCTGAACGCGTTACTCGTATGAAGCCCGAGCAGATTGAAGAGGTTCGACTGCGGCTTAATCTCGATGTTTCTGTTGCTTCTGACTCTCTTCCTGCACCTGCACCAATAGAATCATTTTCAGACATGTGCTTGAACGCAAGTATCATGAAGGATATTGCTTATCATGAATACACAAGGCCAACTTCTATCCAGGCACAAGCCATGCCAATTGCTCTTAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGCAGTGGAAAAACTGCAGCTTTCACCATTCCTATGATAGAGCATTGCTTGGCTCAACCACCAATTCGGCGTGGTGATGGTCCTTTGGCATTGGTATTGGCTCCAACTAGAGAGCTTGCTCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCACTTGAGTCGTTAAAAACTGCAATAGTTGTAGGGGGAACTAACATTGAAAAGCAGAGATCTGAGCTACGAGCAGGAGTTGACATAGTGGTTGCTACCCCTGGAAGATTCATCGATCATTTACAACAAGGCAATACTTCTCTTTCTAGAATTTCTTTGGTTGTTCTAGATGAGGCAGATAGGATGCTTGATATGGGCTTTGAACCACAGATAAGAGAGGTCATGAGAAATCTTCCAGAGAAGCATCAAACATTGTTATTTAGTGCAACTATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTAGCGAGTCCCGTACAAGTGAAGGTAGGGAAAGTGAGTAGCCCAACAGCAAACGTTTGTCAATCTCTTGTGAAGGTTTCTGAAAATGAGAAGATTGACCGGCTACTGGATATGCTTGTTGAGGAGGCTTCACAGGCTGAAAAATGCAGCCGTCCATTTCCATTAACAATTGTGTTTGTGGAGAGGAAGACAAGGTGTGATGAAATTGCTGAAGCATTGGTTGCCCAAGGCTTATCTGCTGTATCTCTTCATGGTGGCCGTAGTCAGAATGAAAGAGAGGCTGCTTTGCATGATTTTCGAAGTGGCTCCACTAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACAGGAGTGTCACATGTCATCAACTTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGCAGGACAGGGCGTGCAGGATCAACGGGCCAGGCGACTTCTTTTTACACTGATCGTGATATGTTCCTTGTTGCAAATATAAGGAAGGCTATAGCCGACCCTGAGTCTGGGAATGCTGTGGCTTTTGCAACTGGGAAGGTCGCTAGAAGGAAGGAGAAAGAGGCAGCAGCTGCCCAAAAAGAGGCAAATATAGCTTTGTCCAAGAACTTAGCTTTTGGAACCGCCTCAATCGCTATTGAGGATAAATATAGGTTCATGATCACCATGTCAAATGTCAAAAGAGAGGGTGCAGCAGATAGTGCTTGGGATGATTGA 1686 0.4603 MSYVPPHLRSSSSTTVAARISSLAIDTNDHSKLPNSHFHTSLTPSSSSSFSNYSRRSFGAPPLSRTLSIPDPVFPNWQPSERVTRMKPEQIEEVRLRLNLDVSVASDSLPAPAPIESFSDMCLNASIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIEHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVDIVVATPGRFIDHLQQGNTSLSRISLVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTANVCQSLVKVSENEKIDRLLDMLVEEASQAEKCSRPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQNEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDMFLVANIRKAIADPESGNAVAFATGKVARRKEKEAAAAQKEANIALSKNLAFGTASIAIEDKYRFMITMSNVKREGAADSAWDD 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1079 561 CDD SF2_C_DEAD 337 473 - -
Lele02g1079 561 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 505 IPR001650 -
Lele02g1079 561 Coils Coil 505 525 - -
Lele02g1079 561 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 323 IPR014001 -
Lele02g1079 561 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 104 516 - -
Lele02g1079 561 FunFam probable ATP-dependent RNA helicase DDX17 76 326 - -
Lele02g1079 561 CDD DEADc 127 324 - -
Lele02g1079 561 Coils Coil 202 222 - -
Lele02g1079 561 Pfam DEAD/DEAH box helicase 140 310 IPR011545 GO:0003676|GO:0005524
Lele02g1079 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 484 IPR027417 -
Lele02g1079 561 SMART ultradead3 135 338 IPR014001 -
Lele02g1079 561 SMART helicmild6 383 464 IPR001650 -
Lele02g1079 561 MobiDBLite consensus disorder prediction 33 53 - -
Lele02g1079 561 Gene3D - 76 327 IPR027417 -
Lele02g1079 561 Pfam Helicase conserved C-terminal domain 348 464 IPR001650 -
Lele02g1079 561 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 269 277 IPR000629 -
Lele02g1079 561 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 116 144 IPR014014 GO:0003724
Lele02g1079 561 Gene3D - 329 522 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1079 Lele-ChrLele02 6787923 6793406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1079 116 477 Eukaryotic Initiation Factors Gene Family AT3G13920 36.612 4.30e-69 227