Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0963 ATGGCTCGCGGCAAGATCCAGATCAAGAGGATTGAGAACACCACCAACCGTCAGGTCACCTACTCCAAAAGACGAAACGGTCTCTTCAAGAAGGCCAATGAGCTCACTGTTCTCTGCGACGCCAAGGTCTCCATTATTATGTTCTCCAGCAGTACCGGCAAACTCCATGAGTACATTAGCCCCTCCATCACAACAAAGGAGTTCTTCGATCAGTACCAAAAGACCGTAGGGATTGATCTATGGAGCTCCCACTATGAGAATATGCTAGAGAACTTGAAGAAGCAGAAAGAAGTGAACAAGAATCTTCGTAGGGAGATTAGGCAGAGGATGGGGGACTGCTTGGATGGTGTGAGCATGGATGACCTGAAGCTACTTGTGGAAGAAATGGAACAGGCCGCCCAGATCATTCGTGAGAGAAAGAATAAGGTGCTTACAAATCAGATCGACACTCAAAGGAAGAAGTACAATAACGAGAGAGACTTACACGGCAGACTCCTACGTGACTTAGAGGCAAGAGCAGAAGATCCACGTTTTGGATTAATAGAAAACCCAATGGAGTATGATGCTGGGATGGGATTCTCCAACATAGGTCCTCGCGTGTTTGCCTTAAGCCTTCACCCTAGTCATCCTAATAATCCTCATTCCGCAGAGCCTGCCTCTGATCTTACCACTTATCCTTTGCTCTTCTAG 690 0.4696 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSSTGKLHEYISPSITTKEFFDQYQKTVGIDLWSSHYENMLENLKKQKEVNKNLRREIRQRMGDCLDGVSMDDLKLLVEEMEQAAQIIRERKNKVLTNQIDTQRKKYNNERDLHGRLLRDLEARAEDPRFGLIENPMEYDAGMGFSNIGPRVFALSLHPSHPNNPHSAEPASDLTTYPLLF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0963 229 Coils Coil 85 109 - -
Lele02g0963 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele02g0963 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele02g0963 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele02g0963 229 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
Lele02g0963 229 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Lele02g0963 229 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Lele02g0963 229 Pfam K-box region 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele02g0963 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 191 - -
Lele02g0963 229 CDD MADS_MEF2_like 2 81 IPR033896 GO:0000977|GO:0045944
Lele02g0963 229 ProSiteProfiles MADS-box domain profile. 1 62 IPR002100 GO:0003677|GO:0046983
Lele02g0963 229 Coils Coil 119 146 - -
Lele02g0963 229 Coils Coil 152 172 - -
Lele02g0963 229 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele02g0963 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 58 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0963 Lele-ChrLele02 5864031 5866270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0963 1 228 MADS-box Gene Family AT3G54340 55.603 2.07e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele02g0963 K-box 2e-14 No_clan