Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0920 ATGGCTGAGCTGGAGAATCCATCTTCAATGGAAGTTTCTGCCGCTTCAGGAGAAGCTAGTTTTTCGCCATCTGGCCATCAGAACGCGCCCGATGAAGTCCCTCCCCCGAAAAAGAAGCGAAACCTCCCCGGAATGCCGGATCCAGATGCCGAGGTGATTGCTTTATCGCCCAAAACGCTGTTGGCGACGAATCGTTTTGTCTGTGAGATCTGCAATAAAGGATTTCAACGGGACCAAAACCTGCAACTTCATCGACGCGGCCACAACCTGCCATGGAAACTACGGCAGCGAACCAGCAAGGATGTTCGTAAGAGAGTGTACGTGTGTCCCGAGCCTTCCTGTGTCCACCATAACCCGTCGAGGGCGCTAGGTGATCTCACCGGCATCAAAAAGCATTTTTGTAGGAAACATGGCGAAAAGAAGTGGAAATGTGAGCGTTGCTCCAAGAAATACGCCGTACAGTCCGATTGGAAGGCTCATATGAAGACTTGCGGAACTAGAGAGTACAAATGTGACTGCGGCACCTTATTCTCTAGGAGGGATAGCTTCATTACGCACAGAGCCTTTTGCGATGCCTTGGCGGAAGAAAGCGCCAGAACCGGAACAACCCTAAACATTGGTGAAGGCTCCGAGGGGAATTCGAATGCGAAGGTTGCTATGGCTTCGCCACCGCAGCCTCCACTAACTCCGTCAACGTCTGTGGTGTCTCCGGCTTTGTCCATTCAGAGCTCAGAAGTTTCGGAAAACCCAATCAGGTTGTCGCCGCCAGCCTCAAACGTAACTTGTTTACCAGCAACCACCGTCGCAAACAGTACTCCCTCCAGTTCTTCCAGCGTTTTCGCCAGTATATTTGCATCCTCAAGTGCTGTTCCTTCTCAAACATCATCGACACTTTCATCGTATTCCAATATGTCTAACTTGGCTCGTTCGGATTGCTCAACTACTGCCCCAACGTTGTCTGCGATAGAGCCCACATCTCTGTCTCTCTCCACATCGCTTTATCTCTCCAATAATGACTCATCCCTGTTCCCGGACCAACGTGAGCCTAGGCACTACGCTGCACCTCCCCAGCCTGCACTGTCCGCCACCGCATTACTTCAAAAGGCAGCTCAAATGGGTGCTGCGGCGTCCAATGCATCGTTGCTTCGAGGTTTAGGCTTCGCAACAGCAACTTCCTTGGCACAAAACGATAGTACCTCGACACAATGGAATAGCCGTGTGAAGACAGAGGATCACTCGTTAACTGATGATGGCCTTGTACTTGGAATTCCTTCTGCTGGTAATACGGGTTTCGCCGACTTGATGATGGGCTCATCAGCGGCGGCGTTTGGAGGACAGCCAATGACTCGTGATCTTCTTGGTCTAAGCATAGGTGGTGCCGGCGGTGCCGGCGGCAGGGGTGGTCTTTCTGCTTTGCTTACCTCTTTTGGAGGTAGATTTGATGTTGCAGAATCATCGACGGGAGGGAGGAATGCTCCGGCTGCTGATTAG 1491 0.5171 MAELENPSSMEVSAASGEASFSPSGHQNAPDEVPPPKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKDVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARTGTTLNIGEGSEGNSNAKVAMASPPQPPLTPSTSVVSPALSIQSSEVSENPIRLSPPASNVTCLPATTVANSTPSSSSSVFASIFASSSAVPSQTSSTLSSYSNMSNLARSDCSTTAPTLSAIEPTSLSLSTSLYLSNNDSSLFPDQREPRHYAAPPQPALSATALLQKAAQMGAAASNASLLRGLGFATATSLAQNDSTSTQWNSRVKTEDHSLTDDGLVLGIPSAGNTGFADLMMGSSAAAFGGQPMTRDLLGLSIGGAGGAGGRGGLSALLTSFGGRFDVAESSTGGRNAPAAD 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0920 496 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 461 IPR031140 -
Lele02g0920 496 Gene3D Classic Zinc Finger 120 199 - -
Lele02g0920 496 Gene3D Classic Zinc Finger 46 111 - -
Lele02g0920 496 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Lele02g0920 496 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Lele02g0920 496 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Lele02g0920 496 Pfam Zinc-finger of C2H2 type 66 88 - -
Lele02g0920 496 MobiDBLite consensus disorder prediction 203 234 - -
Lele02g0920 496 MobiDBLite consensus disorder prediction 9 27 - -
Lele02g0920 496 MobiDBLite consensus disorder prediction 1 49 - -
Lele02g0920 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Lele02g0920 496 FunFam protein indeterminate-domain 12-like 45 113 - -
Lele02g0920 496 SMART c2h2final6 66 88 IPR013087 -
Lele02g0920 496 SMART c2h2final6 107 137 IPR013087 -
Lele02g0920 496 SMART c2h2final6 142 162 IPR013087 -
Lele02g0920 496 MobiDBLite consensus disorder prediction 203 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0920 Lele-ChrLele02 5552483 5554896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0920 13 475 IDZ Gene Family AT5G66730 51.473 2.45e-147 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele02g0920 zf-met 0.0036 CL0361