Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0872 ATGGCTATCCGAGTTACTTTATCCTACTCCAGCTACTTTGCCCAGGGCCTGGCTTCCGCCGGTTGTCGTGCTGGTAGTTCGCGTTGCCTCCACGAATGTTGGATCCGATCTCGCTTATTTTCCCCAAGCCAGAAGCTTGATCGTGATCCCTCCGGAGGCGTGCGTAATTACCGTTTCGATTATGGGCGGCCTGAACCGAATTGCTGGGCTAAGAATTCAGCCTCCCTGTATTCTATTATCTCGAAAGAATTTCTGGGAGATAATTCTGATAATCCGATCATATTGGGTTTGATTTCGATATTGAAGTCAACGGGTTCGGTATCGGCGTCATCTGCAGCGACTATGGCTGCATCTGGCGTTTCCCCAATTAACGCCTCTTCGATTATTCCCTTTTTAAAGGGATCGAGGAGCCTTCCTAGTAACGAGTCAACTCCTGTTCCTGCAACTTTTGAGGTGGATAAAGGAGGGACACTGTGTTATACTGACAGTGATGATGTGAATTCAGGGTACGGTCCCAGAGGTCTTGAGAAGTCAAGCTGGCTATCGCGCTTGTTGAACGTCTGTTCAGAGGATGCGAAGGCTGTGTTTACTGCTGTGACTGTTAGTGTGCTCTTTAAATCGTTCTTGGCTGAACCCAGATCGATTCCCTCGTCTTCTATGTACCCAACTCTGGACGTGGGTGACCGCATTTTAGCGGAGAAGGTTTCATTCCTTTTCAGAAAGCCTGATGTTTCAGATATAGTTATTTTTAAAGCACCACCAAGTTTACGGGAAAAAGGTTTTAGTTCGGCTGATGTATTTATCAAGAGAATTGTGGCTAAGGCTGGGGACTGTGTAGAGGTTCGTGATGGAAAACTGCTGGTGAATGGTGTTGCTCAAGAAGAAGAATTCCTTTTAGAACCCCTTTCTTATGAGATGGATCCAATGGTTGTGCCAGAAGGTTACGTCTTTGTGTTGGGAGATAACCGTAATAACAGCTATGACTCACATAATTGGGGTCCGCTTCCTATAAAGAACATTGTTGGAAGATCCATGTTTCGGTACTGGCCTCCTTCTAAAGTATCCGACACCCTTTATAAATCACCAGTAAACAATTCTCTGGGTGTTTCTTGA 1113 0.4582 MAIRVTLSYSSYFAQGLASAGCRAGSSRCLHECWIRSRLFSPSQKLDRDPSGGVRNYRFDYGRPEPNCWAKNSASLYSIISKEFLGDNSDNPIILGLISILKSTGSVSASSAATMAASGVSPINASSIIPFLKGSRSLPSNESTPVPATFEVDKGGTLCYTDSDDVNSGYGPRGLEKSSWLSRLLNVCSEDAKAVFTAVTVSVLFKSFLAEPRSIPSSSMYPTLDVGDRILAEKVSFLFRKPDVSDIVIFKAPPSLREKGFSSADVFIKRIVAKAGDCVEVRDGKLLVNGVAQEEEFLLEPLSYEMDPMVVPEGYVFVLGDNRNNSYDSHNWGPLPIKNIVGRSMFRYWPPSKVSDTLYKSPVNNSLGVS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0872 370 CDD S26_SPase_I 211 343 IPR019533 GO:0004252|GO:0006465
Lele02g0872 370 ProSitePatterns Signal peptidases I signature 3. 316 329 IPR019758 GO:0004252|GO:0016020
Lele02g0872 370 SUPERFAMILY LexA/Signal peptidase 207 355 IPR036286 -
Lele02g0872 370 Pfam Signal peptidase, peptidase S26 192 349 IPR019533 GO:0004252|GO:0006465
Lele02g0872 370 Gene3D Umud Fragment, subunit A 205 363 - -
Lele02g0872 370 PANTHER SIGNAL PEPTIDASE I 144 356 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele02g0872 370 FunFam Peptidase/ serine-type peptidase 217 348 - -
Lele02g0872 370 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Lele02g0872 370 ProSitePatterns Signal peptidases I serine active site. 217 224 IPR019756 GO:0004252|GO:0016020
Lele02g0872 370 PRINTS Bacterial leader peptidase 1 (S26A) family signature 311 330 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele02g0872 370 PRINTS Bacterial leader peptidase 1 (S26A) family signature 208 224 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele02g0872 370 PRINTS Bacterial leader peptidase 1 (S26A) family signature 267 279 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele02g0872 370 TIGRFAM sigpep_I_bact: signal peptidase I 194 350 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0872 Lele-ChrLele02 5287805 5290016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0872 220 350 MADS-box Gene Family AT1G29960 34.586 2.07e-15 70.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0872 02 5287805 5290016 Lele02g0872 02 5287805 5290016 ECH
Lele02g0872 02 5287805 5290016 Lele03g0886 03 5151439 5153805 hybridization
Lele02g0872 02 5287805 5290016 Lele04g0885 04 5441078 5448388 hybridization