Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0823 ATGCAAGGGACAAGGGGTAGAATAGGTTCTTGGCCTGAAACATTGGAATTTGATTGGGGATCTACTTCAAGCAGTGCTACTGTGGATCAGCAGATTTGCTGGGATAGCACGAGGAGCCCTCTAGAAAATCAAATGCCTCAATTTATGCTTTCACCTGGTGGTATGAACCCGTTGTCCGCAAATTCAATTAACCACGAATTGAAGAGCATGAATAATTGGAGAGTTGGTGTCCCAAGTTCCAGTGACTCTCATATTGAAATTAAAAATGACGAGCAGCAAATGGAACTTGGATGGTCATCTTCAACAAGTGCTGATGCTGTTACCGGTTCAAGATTAGAGCAGCACTTTGGACCAACCAATTTACTTTCATTGGACAATGTCAATACCAGTCCTATGTGTATGAACAACTACAATATTCATTCTGTAACACAGAATATCAACCTAAATGCCAGTTCAGCAGACACTGGCTGTAATATGGGACAACATCTTGAGCATCCTGGCTTGAACAAATTAAGTGGATCAGTATATGAGCCTATCCCACCTAATATTGGTTCTGCCCCCTTTTCCCATCCTTCGGGAAGTAACATGGTAGATGATAGTAGTGGTAGGCCAGGGTGTTCTCTTGATTCCCGTCGTGTATCTTGTAAAAGAAAGGCTGTTGAAGGATATGTTGGACAATCTTCAGGTGGTGAAAGTTCTAGCGGCAACCAGTATAAAGAAAGCAGTGCTTGGAATACACTTACTACTCAGAGTAATTCTCAGAGTAGTTTAAGCAGATCTGCCTCGACAGCACAGATAAGTTCAAGACCTGGCCTGGATGTGGGCAATGAAGTGGGGGTTGGATCTTCAGACAGCATTAATAATTTGAATGTTGCGGGAAGCTCAAATAGCTTCATTAGGAATTCCCGTTTGAGGATAAGTCCTTCAAACCAACAGGATTCCATTCCTTATGTTGCATTCTCAAATGGCAGTGTAACTAGGCGTTCAACAATTCCTTCATCTCCCATGACACCAAGTTTTTGTCCTATTCGTAGTTCTCTGGGTTTGAGGTCAGCACCATCTGCAGATGATATGGTTCCTCAAAGCCTTCCTCTTGGAACTAGTTCTCCTTCTTTACACAGGAATATGCCATCATTTAGATGGAATGGCAGCTCTAACTCTAGAAACAACCATTTGTCAAATTCAATGATTTGGCCAGACAGGGATAATATACTACGTGAAGAAGGAAGCTCAAGAAACATGTCTAGAAGCATATTTGAGCATCCAATGTTTGTGCCAGCGGCTGATTTAAGAAATTCGGTTCGAAATCCAACCAATAGAGCTTCAAGTAGTGCAAATTTAAATGTATCAGGAAATGTTACTTCCTCACTGCGTAGTGGGTCAAGTTCAACCATCAATTCACCATCTGTTCCATCCTGGGTTTCTCATCCCAATCCTCAACATCCACGGAGGTTATCTGAATATCTTCGTAGATCATTGCTGTCTTTTGGTTCTGGGGCTGCTGGAGGTGTCATCAATAGCGATTCTTTATTGCGCCCTGCTCCTATTGCTTCATCTGAAGCAAGGGCACCATCATCTCGAGCTCGTAATCAAGGACGTCATCAGTCACAGTCAAGATCATCATGGATGGAGAGGCGAGTTGATAGTAACTTCAGACTTCCCTATTCATTGCAAACTCCGGCTGTTGCCAGTGAAGGAAATAGTAGACTTGTATCTGAGCTCCGCAGTGTTTTGGGCCTCATGCGTAGGGGAGGGAACCTTCAGTTTGAGGATTTTATGATCTTTGACCATTCAGTATTTTCTGGAATGGTTGATATTCATGACCGACACAGGGACATGCGACTTGATGTCGATAACATGTCTTACGAGGAATTATTGGCTCTGGAAGAACGGATTGGAAATGTGAGTACTGGATTGAGCGAGGAAACTATATTGAAACTGATGAAACAGAGGAAATATTCAGTTGAAGAAGGGTCTCAATGTGAGGCAGAACCCTGCTGTGTGTGTCAGGAAGAGTTTGACAACAGAGATGACGTCGGAACGCTTGATTGTGGCCATGATTACCATACCAACTGCATCAAACAATGGCTAATGCAGAAGAATCTGTGTCCCATTTGCAAGACAACAGGCTTGGCATCGTGA 2142 0.4309 MQGTRGRIGSWPETLEFDWGSTSSSATVDQQICWDSTRSPLENQMPQFMLSPGGMNPLSANSINHELKSMNNWRVGVPSSSDSHIEIKNDEQQMELGWSSSTSADAVTGSRLEQHFGPTNLLSLDNVNTSPMCMNNYNIHSVTQNINLNASSADTGCNMGQHLEHPGLNKLSGSVYEPIPPNIGSAPFSHPSGSNMVDDSSGRPGCSLDSRRVSCKRKAVEGYVGQSSGGESSSGNQYKESSAWNTLTTQSNSQSSLSRSASTAQISSRPGLDVGNEVGVGSSDSINNLNVAGSSNSFIRNSRLRISPSNQQDSIPYVAFSNGSVTRRSTIPSSPMTPSFCPIRSSLGLRSAPSADDMVPQSLPLGTSSPSLHRNMPSFRWNGSSNSRNNHLSNSMIWPDRDNILREEGSSRNMSRSIFEHPMFVPAADLRNSVRNPTNRASSSANLNVSGNVTSSLRSGSSSTINSPSVPSWVSHPNPQHPRRLSEYLRRSLLSFGSGAAGGVINSDSLLRPAPIASSEARAPSSRARNQGRHQSQSRSSWMERRVDSNFRLPYSLQTPAVASEGNSRLVSELRSVLGLMRRGGNLQFEDFMIFDHSVFSGMVDIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLMKQRKYSVEEGSQCEAEPCCVCQEEFDNRDDVGTLDCGHDYHTNCIKQWLMQKNLCPICKTTGLAS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0823 713 SUPERFAMILY RING/U-box 651 709 - -
Lele02g0823 713 MobiDBLite consensus disorder prediction 226 270 - -
Lele02g0823 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 710 IPR013083 -
Lele02g0823 713 MobiDBLite consensus disorder prediction 523 544 - -
Lele02g0823 713 CDD RING-H2_TTC3 665 707 - -
Lele02g0823 713 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 151 711 IPR045191 GO:0061630
Lele02g0823 713 MobiDBLite consensus disorder prediction 434 482 - -
Lele02g0823 713 SMART ring_2 666 706 IPR001841 -
Lele02g0823 713 MobiDBLite consensus disorder prediction 434 476 - -
Lele02g0823 713 FunFam E3 ubiquitin-protein ligase MBR2 634 711 - -
Lele02g0823 713 ProSiteProfiles Zinc finger RING-type profile. 666 707 IPR001841 -
Lele02g0823 713 MobiDBLite consensus disorder prediction 187 201 - -
Lele02g0823 713 MobiDBLite consensus disorder prediction 182 279 - -
Lele02g0823 713 Pfam Ring finger domain 666 707 IPR001841 -
Lele02g0823 713 MobiDBLite consensus disorder prediction 517 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0823 Lele-ChrLele02 5018610 5022267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0823 199 713 C3H Transcription Factor Family AT2G15530 35.741 1.20e-75 256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0867 28 5590110 5593115 Lele02g0823 02 5018610 5022267 CCT
Lele25g0873 25 5585800 5590462 Lele02g0823 02 5018610 5022267 CCT
Lele26g0885 26 5664529 5669839 Lele02g0823 02 5018610 5022267 CCT
Lele27g1206 27 19083783 19087627 Lele02g0823 02 5018610 5022267 CCT
Lele02g0823 02 5018610 5022267 Lele02g0823 02 5018610 5022267 ECH
Lele02g0823 02 5018610 5022267 Lele03g0839 03 4905029 4908464 hybridization
Lele02g0823 02 5018610 5022267 Lele04g0844 04 5163602 5167247 hybridization