Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0801 ATGCTTGACTCGTTTCAGGTTTTACGCATTCAGCATTTGCTTTTGGGCATGAGGCAGGGATTGATAAAAGCAGAATTGATGAGCCATGCAGAGCCTGATGACGATTTCTCATTTGTACAACCTCTTGACCTTATTACAAAGGATCCTAATGAACTACGCAATATTGTTAAAGCCAAAAGGGAAAATCTACGTCAACATAAGTTTGAAGCAAATAAAAATGAGAATCATTACAGTCAAGACACGGCAAGAGAACAAGCTTTAGAAATGGAAGAAGAGGGCAAGGAAAGGGAAAATGAACATGAAATTGATAAAACAAACCTAGAGAAAGTAGCAGAACAAGAAAAGGGTGAATATAAAGAAATACATCATTCAGATCAAAATGATGCGGAGAGGGAGGAGGATAAGGTTGTTTTCACTTGTGCATGGAATCCATCAGGCTCACTTCTTGCATCTGGATCTGGAGATTCAACAGCTCGGATTTGGAAAGTTACGGAAGGACCTTTTAACACTAGCATAAATGTTGAGGTGCTAAGGCACTTCAAAGGAAGAAATAATGAGAAAAGCAAGGATGTGACAACACTTGACTGGAATGGGGATGGGACATTACTGGCAACTGGTTCTTATGATGGTCAAGCAAGAATATGGAGTAGAGATGGAGACTTGAAGAGCACATTAAACAAGCATAAAGGTCCTATCTTTTCTTTGCAATGGAATAAGAAGGGGGATTATCTTCTTAGTGGCAGCGTTGATAAAACTACTATTGTATGGGATATAAAGACCGGGGAATGGAAACAACAATTTGAATTTCACGCTGCGCCGACTCTTGATGTAGATTGGCCAAACAATGTTTCATTTGCAACATGTTCCACAGATAACATGATATTTGTGTGCAAAATTGGAGAATTGGCCAATCAAAACTTTCTCAGGGCTTCAGTTAATGCTATCAAATGGGATCCAACAGGCTCTTTTCTGGCTTCTTGCTCAGATGATCGCCCTGCCAAAATTTGGAGTCTGAAGCAGGACAAGTATTTACATGATTTGAAGGAACATGTTAAGGAGATATATACCATTCGGTGGAGTCCTACTGGCCCCTCTACAAGCAACCCCAATCAGCCACTAGTTCTAGCAAGGGATCCTGTATATTCCATTTCATTGAGCCCAAATGGTGAGTATCTGGCGAGTGGCTCCATGGATAAATGCATGCATATATGCTTCTGCACAGCGGCACTGGCTACATTATTGTTCCTGGCCTATGCTTGCGCTCGCCCAGTTCATTGGCAAGGTGAGATGGAAATGGAAGAGGATAACCCTCAGAAATTGGCGTGGCTGCATTTTACCTCGCACGTGCATGCTGGACACAGCGCTTAG 1368 0.4181 MLDSFQVLRIQHLLLGMRQGLIKAELMSHAEPDDDFSFVQPLDLITKDPNELRNIVKAKRENLRQHKFEANKNENHYSQDTAREQALEMEEEGKERENEHEIDKTNLEKVAEQEKGEYKEIHHSDQNDAEREEDKVVFTCAWNPSGSLLASGSGDSTARIWKVTEGPFNTSINVEVLRHFKGRNNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSRDGDLKSTLNKHKGPIFSLQWNKKGDYLLSGSVDKTTIVWDIKTGEWKQQFEFHAAPTLDVDWPNNVSFATCSTDNMIFVCKIGELANQNFLRASVNAIKWDPTGSFLASCSDDRPAKIWSLKQDKYLHDLKEHVKEIYTIRWSPTGPSTSNPNQPLVLARDPVYSISLSPNGEYLASGSMDKCMHICFCTAALATLLFLAYACARPVHWQGEMEMEEDNPQKLAWLHFTSHVHAGHSA 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0801 455 CDD WD40 135 403 - -
Lele02g0801 455 ProSitePatterns Trp-Asp (WD) repeats signature. 244 258 IPR019775 -
Lele02g0801 455 FunFam WD40 repeat-containing protein HOS15 117 377 - -
Lele02g0801 455 Gene3D - 120 412 IPR015943 GO:0005515
Lele02g0801 455 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Lele02g0801 455 PRINTS G protein beta WD-40 repeat signature 149 163 IPR020472 -
Lele02g0801 455 PRINTS G protein beta WD-40 repeat signature 324 338 IPR020472 -
Lele02g0801 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 262 - -
Lele02g0801 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 130 171 IPR001680 GO:0005515
Lele02g0801 455 MobiDBLite consensus disorder prediction 66 107 - -
Lele02g0801 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 130 166 - -
Lele02g0801 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 346 IPR001680 GO:0005515
Lele02g0801 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 216 IPR001680 GO:0005515
Lele02g0801 455 PANTHER WD40 REPEAT PROTEIN 17 376 IPR045183 GO:0003714|GO:0016575
Lele02g0801 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 216 - -
Lele02g0801 455 SUPERFAMILY WD40 repeat-like 134 403 IPR036322 GO:0005515
Lele02g0801 455 Pfam WD domain, G-beta repeat 222 257 IPR001680 GO:0005515
Lele02g0801 455 Pfam WD domain, G-beta repeat 311 336 IPR001680 GO:0005515
Lele02g0801 455 Pfam WD domain, G-beta repeat 128 162 IPR001680 GO:0005515
Lele02g0801 455 Pfam WD domain, G-beta repeat 177 216 IPR001680 GO:0005515
Lele02g0801 455 Pfam WD domain, G-beta repeat 379 403 IPR001680 GO:0005515
Lele02g0801 455 SMART WD40_4 218 257 IPR001680 GO:0005515
Lele02g0801 455 SMART WD40_4 260 298 IPR001680 GO:0005515
Lele02g0801 455 SMART WD40_4 304 337 IPR001680 GO:0005515
Lele02g0801 455 SMART WD40_4 173 216 IPR001680 GO:0005515
Lele02g0801 455 SMART WD40_4 340 405 IPR001680 GO:0005515
Lele02g0801 455 SMART WD40_4 114 162 IPR001680 GO:0005515
Lele02g0801 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0801 Lele-ChrLele02 4884948 4889266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0801 189 351 Eukaryotic Initiation Factors Gene Family AT2G46280 25.967 1.12e-10 60.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0801 02 4884948 4889266 Lele02g0801 02 4884948 4889266 ECH
Lele02g0801 02 4884948 4889266 Lele03g0816 03 4785511 4790082 hybridization
Lele02g0801 02 4884948 4889266 Lele04g0820 04 5024391 5032476 hybridization