Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0797 ATGGATTGCCTAACCACAGTCAGATTCAAAGAATACGTGGCAACCCATTCTGACATCGTTATTTCTACTCAGCGTCTGAATCCATGCATGTTAAAACATTTTACTGCATACCTAAGTTCCGGTTGGGTTCTCTCTTTCTGTACATTTTGCGAGGAACTCGTGAGGGTAATGATATTTGCTTACTTTCCTATACTTGTTGATATATTTGGCCTCTGTCCATCTTCTCTCTCACAATTCACAGAAGATTGCGCAGACCGGCTTTTATACAATTTTCCTACAAAAGAGAGAGAAGGGCTGAGATTCAAAAGTTCTGTCAGTGGGGGAAATATGGGAAGAGTGAAGCTTCAGATCAAGAAGATCGAGAACGCAACAAATAGACAGGTCACCTTCTCAAAGAGGAGAAATGGACTCATCAAGAAAGCTTATGAGCTTTCTGTACTCTGTGACGTTGATGTGGCTGTCATCATGTTTTCTCCGTCCGGGAAAGCAAGTATCTTCTCTGGGTTTAAAAGCATCGAAGAAATTTTTGAACGATATCTTGATCTTCCTGAACAAGAACGGGTTAGGTATGACTCTGGTTTCTGCGCTTATCCCATGATTTATCTGAGATAA 612 0.4101 MDCLTTVRFKEYVATHSDIVISTQRLNPCMLKHFTAYLSSGWVLSFCTFCEELVRVMIFAYFPILVDIFGLCPSSLSQFTEDCADRLLYNFPTKEREGLRFKSSVSGGNMGRVKLQIKKIENATNRQVTFSKRRNGLIKKAYELSVLCDVDVAVIMFSPSGKASIFSGFKSIEEIFERYLDLPEQERVRYDSGFCAYPMIYLR 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0797 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 119 163 IPR002100 GO:0003677|GO:0046983
Lele02g0797 203 PANTHER MADS BOX PROTEIN 112 180 - -
Lele02g0797 203 CDD MADS_MEF2_like 111 184 IPR033896 GO:0000977|GO:0045944
Lele02g0797 203 FunFam Agamous-like MADS-box protein AGL66 isoform A 123 188 - -
Lele02g0797 203 ProSiteProfiles MADS-box domain profile. 110 170 IPR002100 GO:0003677|GO:0046983
Lele02g0797 203 SUPERFAMILY SRF-like 111 188 IPR036879 GO:0003677|GO:0046983
Lele02g0797 203 PRINTS MADS domain signature 147 168 IPR002100 GO:0003677|GO:0046983
Lele02g0797 203 PRINTS MADS domain signature 132 147 IPR002100 GO:0003677|GO:0046983
Lele02g0797 203 PRINTS MADS domain signature 112 132 IPR002100 GO:0003677|GO:0046983
Lele02g0797 203 SMART madsneu2 110 169 IPR002100 GO:0003677|GO:0046983
Lele02g0797 203 Gene3D - 122 196 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0797 Lele-ChrLele02 4870415 4871702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0797 110 187 Type I MADS-box Gene Family AT1G22130 73.077 1.34e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele02g0797 SRF-TF 3.8e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0797 02 4870415 4871702 Lele02g0797 02 4870415 4871702 ECH
Lele02g0797 02 4870415 4871702 Lele03g0813 03 4773497 4775958 hybridization
Lele02g0797 02 4870415 4871702 Lele04g0816 04 5007519 5007987 hybridization