Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0771 ATGCCTTCAGGTGGTGGCCCCGAGGTGCTCGATCTAGACCCTGCTGTGAAAGGCGGGGCTTTGGACGGCAGAGCTCCTCTACCTGGCGGTGGTTGCAGCGACGGTTACAAAATAGACCTGAAGGTGTTGATTGAAGAGCTGGATTCAGTTGATGTGCCCTCGGTGTTCGTCTGTCCAATCTCGTTAGAGCCCATGCTAGAGCCTGTGACCCTTTGCACGGGTCAGACCTATGACAGATCCAACATTCTCAAATGGTTTGCTCTGGGTCATAACACCTGCCCCACAACGATGCAGGAACTCTGGGACGATTCAGTGACGCCGAACAGGACTCTCTGTCAATTAATCCATAGTTGGTTCTCCCAGAAGTACCTCTCATTGAAGAAGCAGTTCCAGGATGTGCAAGGAAAAGCTCTGGAGCTCCTAGAGACACTCAAGAAGGTGAAGGGTCAAGCCAGAGTTCACGCCCTTCGAGATCTTAGGCAGATTGTCACTGCCCATGCGTCCACAAGGAAGACGGTCGACGAAAATGGTGGGCTTGCTTTAATTTCTTCTTTGATGGGTCCTTTCACTTCCCACGCAGTTGGGTCGGAAGCTATTGGAATTCTAGTGAATTTGGATTTGAATTCAGAGTGGAAGAGAAATCTGATGCATCCGGCAAAGATATCCTTGTTGGTCGATGTTATGAACGAAGGAACGATTGAGACCAAGATGAACTGTGCCAAATTGATAGAAGCACTGCTGATGGAGGTGAATGAGTCAGAGACAGAGATTTTGTCAAGCTTGAGCCTTTTGGTTGGATTATTGAGGTTAGTGAGGGATAAGAAACACCCAACAGGCGTCATGACTGGGCTCATGCTACTGAAGACAATCTGTTCCCACGAATCAGTGAGAAGCTCCATGGTAAGCCTAGGAGCAGTTTCTCAGTTGATTGAGCTTCTTCCAAGTTTAAACCATGAGTGTCTGGAGATAGCACTGAACATTTTAGAGGTGTTGTCAACACTTCCAGAGGGAAGACTGGCATTGAAAGAGTGCCCGAACATCATACCCAATGTGGTGAAGTTAATGATGAGAGTATCAGAGAGCAGCACTCAATTCGCATTGTCAATATTGTGGGCTATCTACAAGCTTGCCCCTGAAGAATGTGCATCACAGGCCGTGGAGGCAGGTCTGGCTCCCAAGTTGCTGCTCGTGATTCAGAGTGGTTGCAACCCCGTGTTGAAGCAGATGTCTACCGAGTTCTTAAAAATGTGCAGTCTCAATTACTCCACTAGTCTCTTGATCTCTAAATGTATGCTCACCAGAACAATACGGTGA 1314 0.4802 MPSGGGPEVLDLDPAVKGGALDGRAPLPGGGCSDGYKIDLKVLIEELDSVDVPSVFVCPISLEPMLEPVTLCTGQTYDRSNILKWFALGHNTCPTTMQELWDDSVTPNRTLCQLIHSWFSQKYLSLKKQFQDVQGKALELLETLKKVKGQARVHALRDLRQIVTAHASTRKTVDENGGLALISSLMGPFTSHAVGSEAIGILVNLDLNSEWKRNLMHPAKISLLVDVMNEGTIETKMNCAKLIEALLMEVNESETEILSSLSLLVGLLRLVRDKKHPTGVMTGLMLLKTICSHESVRSSMVSLGAVSQLIELLPSLNHECLEIALNILEVLSTLPEGRLALKECPNIIPNVVKLMMRVSESSTQFALSILWAIYKLAPEECASQAVEAGLAPKLLLVIQSGCNPVLKQMSTEFLKMCSLNYSTSLLISKCMLTRTIR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0771 437 PANTHER WDSAM1 PROTEIN 48 424 IPR045185 GO:0061630
Lele02g0771 437 SMART Ubox_2 55 118 IPR003613 GO:0004842|GO:0016567
Lele02g0771 437 SUPERFAMILY ARM repeat 221 420 IPR016024 -
Lele02g0771 437 SUPERFAMILY ARM repeat 122 251 IPR016024 -
Lele02g0771 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 130 IPR013083 -
Lele02g0771 437 SUPERFAMILY RING/U-box 46 122 - -
Lele02g0771 437 CDD RING-Ubox_PUB 56 98 IPR045210 -
Lele02g0771 437 ProSiteProfiles U-box domain profile. 51 125 IPR003613 GO:0004842|GO:0016567
Lele02g0771 437 Pfam U-box domain 52 122 IPR003613 GO:0004842|GO:0016567
Lele02g0771 437 Gene3D - 131 428 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0771 Lele-ChrLele02 4706746 4708059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0771 4 437 U-box Gene Family AT3G49810 62.442 0.0 529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0771 02 4706746 4708059 Lele25g0795 25 5077841 5083163 CCT
Lele02g0771 02 4706746 4708059 Lele26g0807 26 5136283 5140092 CCT
Lele02g0771 02 4706746 4708059 Lele27g1281 27 19590751 19595243 CCT
Lele02g0771 02 4706746 4708059 Lele28g0794 28 5071075 5075986 CCT
Lele02g0771 02 4706746 4708059 Lele02g0771 02 4706746 4708059 ECH
Lele02g0771 02 4706746 4708059 Lele03g0792 03 4631975 4634497 hybridization
Lele02g0771 02 4706746 4708059 Lele04g0789 04 4837115 4838428 hybridization