Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0760 ATGGAGGAATATAGTAACCAGGTGAGCGAAAGCACAGGTTCACGGCCAAATTTCCTGTACTCATTCACTACAGTTGGAGGTTCAAGTGTGGGGAACCATCATCAGTCGCCCAGAACTACCTTTCATCTTCAATCAGGTGGATCAGAGCTCTATCAATCTGTGAAAACCGAAGCCAACACCGCCAATAATCACTCTCAGATTTTCCACTATCCTTTGATCAGACAAAGCCTTCAGACCCACGGAGGAGGGCGAACCACTGACGAAGTTGAATCTCTTAAAGCTAAAATCATTGCTCATCCTCACTATTCCAATCTCTTGGAAGCCTACATGAACTGCCACAAGGTAGGAACTCCGCCGGAAGTGGTGGCGCGTCTGACAGCGGCAAGGCAAGAGTTCGAGGCACGACAGCAATCTTCGGTCAGATCCAGGGAAACTCACAAGGACCCAGAACTTGACCGATTTATGGAAGCTTACTATGACATGCTCGTGAAGTATGGGGAGGAATTAACTAGGCCGGTTCAAGAGGCAATGGATTTCATAAACAACATCGAAGCTGAGCTCAATATGCTCTGTAATGCACCTGCGCGCATCTTCCCTGACAGATATACGGTTGTCCGCAATTTGACATTAATAATCGGAAACTTTGACCAAATTTTACGCATTCAAGACGGGGGGAATGGACCCAGAAAGAAAGATGATTTTGATGAAGCTCAGAACCCTAATAAGCAGCCTATATATGTACCAGGAGATAAGGTCGACGGTGTGGATTCATCTGAAGAGGATCAAGATAATAGTGGAGGAGAAGCAGAAATGGCCGGAATTGATGATCCTCTAGCTGAAGATCGCGAGCTTAGGAAACACTTGCTAAGAAAGTATAGTGGGTACTTAGGTAGCCTGAAGCAAGAACTTTCAAAGAAAAAGAAGAAAGGAAAACTGCCTAAAGATGCGACGCAAAAGCTTCTTGATTGGTGGGAATTACACTACAAATGGCCCTATCCTTCGGAATCAGAGAAGGTGGCATTGGCAGAATCAACAGGGTTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAACGGCACTGGAAGCCATCAGAAGACATGCAGTTTATGGTGATGGAAGGCCTTCATCAACAGAATCCAGCTCTCTGTATGGATGCTCACTACATGGCTGATGCTCACTACCGTCTAGGGCCATGA 1206 0.4561 MEEYSNQVSESTGSRPNFLYSFTTVGGSSVGNHHQSPRTTFHLQSGGSELYQSVKTEANTANNHSQIFHYPLIRQSLQTHGGGRTTDEVESLKAKIIAHPHYSNLLEAYMNCHKVGTPPEVVARLTAARQEFEARQQSSVRSRETHKDPELDRFMEAYYDMLVKYGEELTRPVQEAMDFINNIEAELNMLCNAPARIFPDRYTVVRNLTLIIGNFDQILRIQDGGNGPRKKDDFDEAQNPNKQPIYVPGDKVDGVDSSEEDQDNSGGEAEMAGIDDPLAEDRELRKHLLRKYSGYLGSLKQELSKKKKKGKLPKDATQKLLDWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMEGLHQQNPALCMDAHYMADAHYRLGP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0760 401 SMART KNOX1_2 90 134 IPR005540 GO:0003677|GO:0005634
Lele02g0760 401 SMART KNOX2_2 141 192 IPR005541 GO:0003677|GO:0005634
Lele02g0760 401 Pfam Homeobox KN domain 323 362 IPR008422 GO:0003677|GO:0006355
Lele02g0760 401 CDD homeodomain 315 367 IPR001356 GO:0003677
Lele02g0760 401 ProSitePatterns 'Homeobox' domain signature. 341 364 IPR017970 GO:0000981|GO:0006355
Lele02g0760 401 Pfam KNOX1 domain 92 133 IPR005540 GO:0003677|GO:0005634
Lele02g0760 401 ProSiteProfiles ELK domain profile. 283 303 IPR005539 GO:0003677
Lele02g0760 401 SMART ELK_2 283 304 IPR005539 GO:0003677
Lele02g0760 401 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 373 - -
Lele02g0760 401 Pfam ELK domain 283 304 IPR005539 GO:0003677
Lele02g0760 401 Pfam KNOX2 domain 145 191 IPR005541 GO:0003677|GO:0005634
Lele02g0760 401 Gene3D - 308 370 - -
Lele02g0760 401 SUPERFAMILY Homeodomain-like 304 375 IPR009057 -
Lele02g0760 401 SMART HOX_1 305 370 IPR001356 GO:0003677
Lele02g0760 401 FunFam Homeobox protein knotted-1-like 2 308 370 - -
Lele02g0760 401 MobiDBLite consensus disorder prediction 223 277 - -
Lele02g0760 401 ProSiteProfiles 'Homeobox' domain profile. 303 366 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0760 Lele-ChrLele02 4595038 4597772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0760 53 401 Homeobox Transcription Factor Family AT4G08150 57.423 3.47e-124 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele02g0760 KNOX2 6.5e-23 No_clan