LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele02g0731	ATGGAGGGAGTGAGAGTGAAAGTGGAAGAAACGGTGGTATGTGGAGCTGCTTCGTCATACTCTCCTTCATCTTCCTCTTCGAGCCTCTCTCCTCGCCCCATGGAAGGGCTGCACGAGACGGGGCCTCCCCCATTTCTTATCAAGACCTTTGAAATGGTGGAAGACCCATCCACCGACCCTGTTGTTTCTTGGAGCCTTGCTCGTAACAGCTTCATTGTCTGGGACTCTCACGAGTTCTCCACAACCATTCTTCCTCGCTACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGCCAGCTTAACACCTATGGATTTAGAAAAGTGGATCCTGATCGATGGGAATTTGCAAACGAAGGGTTTTTGGGTGGACAGAAACACTTATTGAAGACAATCAAGAGAAGAAGAAATATGTCGCAGAGTGGGCAACAAGAACGAGGGGTTGCTTGTGTTGAACTGGGGCAATACGGATTTGAAGGTGAGCTCGACAGGTTGAGAAGAGACAGGACGGTGATCATGGCTGAGATTGTGAAATTGAGACAGCAACAGCAGAATTCACGGGCACAACTGATTGCGATGGAGGAAAGATTACAGACCACAGAGAAGAAACAGCAACAGGTTCTCACTTTCCTTGCCAAAGCACTGAACAACCCAACTTTTATCCAACAGTTTGCCCAGAGAAACTCCCAAAACAGAGAATTACTTGGTGTTGACATCAGGCGAAAGAGGAGACTAACTGCTAGCGCGAGTGTGGAGAATTTGCAGGATGATCCTGTGACAGTGGCAGTGCCTAGTGAACCATTGGTGGACTACTCAACAAATGAACAAGAAGATTTGGCAACGATAGAATCTGAGATAGAGATATTTTTCTCAGCTCCTCATGATAATGAATCAAGCAGTGACAAGAAAGAGCCAGCGTCAAGTTCAATTCCTACGGCAAGCAGGAGCAATCTGGGTTCAGGGAGTGACGCAATATGGGAGGACTTGCTGAACGAAGACTTGGTTCATGGAAATCCAGAGGAGGAAATTATATTTGGTGAACAGTCCCAAACCGATGCTCCAGTGGAAGATTTGGTAGCAAAGTCTGATGAGTGGGATGAAGGTTTGGAGGACTTGGTAGATCAATTGGGTTATCTTGGGTCAAAACCCCAGTGA	1152	0.4688	MEGVRVKVEETVVCGAASSYSPSSSSSSLSPRPMEGLHETGPPPFLIKTFEMVEDPSTDPVVSWSLARNSFIVWDSHEFSTTILPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRNMSQSGQQERGVACVELGQYGFEGELDRLRRDRTVIMAEIVKLRQQQQNSRAQLIAMEERLQTTEKKQQQVLTFLAKALNNPTFIQQFAQRNSQNRELLGVDIRRKRRLTASASVENLQDDPVTVAVPSEPLVDYSTNEQEDLATIESEIEIFFSAPHDNESSSDKKEPASSSIPTASRSNLGSGSDAIWEDLLNEDLVHGNPEEEIIFGEQSQTDAPVEDLVAKSDEWDEGLEDLVDQLGYLGSKPQ	383

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele02g0731	383	Coils	Coil	161	202	-	-
	Lele02g0731	383	Pfam	HSF-type DNA-binding	45	134	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lele02g0731	383	ProSitePatterns	HSF-type DNA-binding domain signature.	84	108	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lele02g0731	383	SUPERFAMILY	"Winged helix" DNA-binding domain	41	134	IPR036390	-
	Lele02g0731	383	MobiDBLite	consensus disorder prediction	17	38	-	-
	Lele02g0731	383	Gene3D	-	37	135	IPR036388	-
	Lele02g0731	383	FunFam	Heat shock transcription factor 1	38	135	-	-
	Lele02g0731	383	MobiDBLite	consensus disorder prediction	302	320	-	-
	Lele02g0731	383	MobiDBLite	consensus disorder prediction	17	33	-	-
	Lele02g0731	383	PRINTS	Heat shock factor (HSF) domain signature	45	68	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele02g0731	Lele-ChrLele02	4410501	4412013	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele02g0731	31	382	HSF	AT2G26150	53.521	3.61e-133	383

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Lele02g0731		HSF_DNA-bind	2.2e-31	CL0123

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