Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele02g0724 | ATGTCGACGGTATACGTGTTAGAACCGCCGACGAAAGGGAAGGTGGTGTTGAAAACAACCCATGGTCCGCTCGACATTGAGCTATGGCCCAAGGAAGCCCCCAAGGCTGTCCGGAACTTCGTGCAGCTGTGCCTTGATGGTTACTACGTTAACACCATCTTTCATCGAATCATCAAGGACTTTCTTATCCAGGGCGGCGATCCCACTGGCACCGGCACAGGGGGTGAAAGTATTTATGGGGGTGTTTTCTCTGATGAATTTCATTCACGTTTAAGATTTAAACATAGAGGTTTAGTTGCAATGGCAAATTCTGGGTCACCACACTCCAATGGGAGTCAGTTTTTCATAACTCTGGATCGTTGCGATTGGCTTGATCGGAAGCATACAATTTTTGGGAAGGTGACAGGAGATACTGTGTACAATCTTTTGAGATTGGGTGAACTTGAAACTGATAAGAATGATCGGCCTCTAGATCCCCCAAAAATATTATCAATTGAGGTATTATGGAACCCATTTGATGATATTGTTCCAAGAACAACTCAACCTCAGATCCAAACTAGTAGTGATACAGACAATAAAGATTCAAAGAAAAAAGCTGTAAAAAAACTGAACTTACTTTCATTTGGAGAAGAAGCCGAAGAAGAGGAAAAGGAGCTGGCATCTGTAAAACAAAAGATTAAGAGCAGTCATGATGTATTGAATGATCCTCGTCTTCTCAAGAAAGCAATTCCTAATAATGAACTGGGCTCAAAGTCAACAAGAGATGTGCAGTTATCTGTAAGGGATGCATTGAGCTCAAAGAAAGAAGAGTCTCAGAAAAAATCAGAAGATAATGACTTGGCCAACCTTGATGATGGTGATGATGGTGATGATGATGATGATGATGATGAGGCGGGCTTTGATGCTAGAATGCGCAGTCAGATACTTAAAAAACGCCAAGAGTTAGGGGATTTACCGCCCAAGCCAAAGTTGCGAAATGGAAGCTCAAGTCCAAAGAGCCACAATTCATCAGCAATCAGGTCCAATGCTGCAAGTGTTGATGATCAGCGTAGGGTGGAAAAATTGTCCGTGAAGAAAAAGGGAATAGGATCTGAAGCAAGAGCTGAACGAATGGCAAATGCAGATGTAGATTTACAGTTGTTCAATGAATCTGAGAAAAATCGACAGTTGCAGAAGCAGAAGAAACGCAGGGTTCAAGGACGTGAAGATGAGGTTCTATCAAAACTAGAGAAATTTAAGAAGACTATATCGGGAAAGACCACATCCTCAACCGATGGATCTGGAAATGTAAATGAAGAGGATTTGTCGAACTGGAAAGGAAGTAGCTTAAAATTTACACCTGAGTCCGGCAAGGATCGGATGTCGCGTAACGATGACCCTAACGACTATGTTGTGGTAGACCCCCTTTTGGAGAAAGGTAAAGAGAAGTTCAATAGGATGCAGGCCAAACAAAAGAGACGAGAGCGAGAGTGGGCTGGCAAATCCCTTACTTGA | 1494 | 0.4277 | MSTVYVLEPPTKGKVVLKTTHGPLDIELWPKEAPKAVRNFVQLCLDGYYVNTIFHRIIKDFLIQGGDPTGTGTGGESIYGGVFSDEFHSRLRFKHRGLVAMANSGSPHSNGSQFFITLDRCDWLDRKHTIFGKVTGDTVYNLLRLGELETDKNDRPLDPPKILSIEVLWNPFDDIVPRTTQPQIQTSSDTDNKDSKKKAVKKLNLLSFGEEAEEEEKELASVKQKIKSSHDVLNDPRLLKKAIPNNELGSKSTRDVQLSVRDALSSKKEESQKKSEDNDLANLDDGDDGDDDDDDDEAGFDARMRSQILKKRQELGDLPPKPKLRNGSSSPKSHNSSAIRSNAASVDDQRRVEKLSVKKKGIGSEARAERMANADVDLQLFNESEKNRQLQKQKKRRVQGREDEVLSKLEKFKKTISGKTTSSTDGSGNVNEEDLSNWKGSSLKFTPESGKDRMSRNDDPNDYVVVDPLLEKGKEKFNRMQAKQKRREREWAGKSLT | 497 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele02g0724 | 497 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 22 | 167 | IPR002130 | GO:0000413|GO:0003755 | |
| Lele02g0724 | 497 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 54 | 66 | IPR002130 | GO:0000413|GO:0003755 | |
| Lele02g0724 | 497 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 98 | 113 | IPR002130 | GO:0000413|GO:0003755 | |
| Lele02g0724 | 497 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 126 | 141 | IPR002130 | GO:0000413|GO:0003755 | |
| Lele02g0724 | 497 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 113 | 125 | IPR002130 | GO:0000413|GO:0003755 | |
| Lele02g0724 | 497 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 28 | 43 | IPR002130 | GO:0000413|GO:0003755 | |
| Lele02g0724 | 497 | MobiDBLite | consensus disorder prediction | 346 | 372 | - | - | |
| Lele02g0724 | 497 | MobiDBLite | consensus disorder prediction | 468 | 497 | - | - | |
| Lele02g0724 | 497 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 49 | 66 | IPR020892 | GO:0003755|GO:0006457 | |
| Lele02g0724 | 497 | Coils | Coil | 205 | 232 | - | - | |
| Lele02g0724 | 497 | MobiDBLite | consensus disorder prediction | 326 | 344 | - | - | |
| Lele02g0724 | 497 | SUPERFAMILY | Cyclophilin-like | 14 | 180 | IPR029000 | - | |
| Lele02g0724 | 497 | FunFam | Peptidyl-prolyl cis-trans isomerase CWC27 homolog | 1 | 179 | - | - | |
| Lele02g0724 | 497 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 15 | 167 | IPR002130 | GO:0000413|GO:0003755 | |
| Lele02g0724 | 497 | MobiDBLite | consensus disorder prediction | 262 | 280 | - | - | |
| Lele02g0724 | 497 | MobiDBLite | consensus disorder prediction | 281 | 298 | - | - | |
| Lele02g0724 | 497 | MobiDBLite | consensus disorder prediction | 396 | 415 | - | - | |
| Lele02g0724 | 497 | CDD | cyclophilin_CeCYP16-like | 8 | 179 | - | - | |
| Lele02g0724 | 497 | Gene3D | - | 2 | 182 | IPR029000 | - | |
| Lele02g0724 | 497 | MobiDBLite | consensus disorder prediction | 262 | 497 | - | - | |
| Lele02g0724 | 497 | MobiDBLite | consensus disorder prediction | 416 | 444 | - | - | |
| Lele02g0724 | 497 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 11 | 217 | IPR044666 | - | |
| Lele02g0724 | 497 | MobiDBLite | consensus disorder prediction | 299 | 319 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele02g0724 | Lele-ChrLele02 | 4370799 | 4374503 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele02g0724 | 9 | 172 | U-box Gene Family | AT5G67530 | 50.610 | 5.27e-46 | 167 |