LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele02g0669	ATGACGACGTTACCGATTCCAAAGGGAAAAGACCACAGAGATCGGTTACCTGAGACACGTACGGATCTTGAAGTGAAGCAAATTAATTCTGATATGGAATCAACATGCGTGGATACCTCTCTCAACCTCAACGTTAGTCCTCGGGACACAGAAGTTATCACGGCTGAGGATTTGGTGCAAGAGTTGCATCGTTTAAGCAGTGAGAATCAGAAGCTAACGGAGAGACTTACTCACATGCGTGAGAACTGCAATCTTTTGAAAAAGCAATTGAGCCAAGCGATGATCAAGAACACCAGAAATAGTAGTCCTGAAAGGGATCCACAGACTAATCAATCAAGGAAGAGAAAGGCTGAGACTGATGCCTGCTGTATCGATAACATGATAAGTATTAGCAGCAACACCGAGTGCAGCAACGTTACCGACGAATTAGATTCATCATTCAGAAGACCAGCCGCTAAGGTTTCCAGAGTTCTGGTGCGAACCCAAGCATCAGATACCGGTTTGTATGTGAGGGATGGATATCAGTGGAGGAAATATGGTCAGAAGGTGACTCGAGATAACCCTTCTCCAAGAGCTTACTTCAGGTGCTCCTTTGCACCAAGCTGCCCTGTGAAAAAGAAGGTGCAAAGAAGTGCAGAAGACCCGACAGTGTTGGTGGCAACATACGAAGGAGATCACAACCATGGACGACATGGACCTGAATTATTACCATCACTAGCCTCGAATAACCAGAGCCAAAGCGATTCAGGATTAATGACTGAGAATGGTGGTGGAAAGTCAATGCAGCAGTGTTTGGTTCAACAAATGGCCAATTCTTTGACCAGAGATCCCAACTTTACAGCAGCACTCGCCACCGCCATCTCCGGAAGAATTTTAAACCTTGCTTCTAGTTAA	894	0.4541	MTTLPIPKGKDHRDRLPETRTDLEVKQINSDMESTCVDTSLNLNVSPRDTEVITAEDLVQELHRLSSENQKLTERLTHMRENCNLLKKQLSQAMIKNTRNSSPERDPQTNQSRKRKAETDACCIDNMISISSNTECSNVTDELDSSFRRPAAKVSRVLVRTQASDTGLYVRDGYQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPTVLVATYEGDHNHGRHGPELLPSLASNNQSQSDSGLMTENGGGKSMQQCLVQQMANSLTRDPNFTAALATAISGRILNLASS	297

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele02g0669	297	Coils	Coil	55	89	-	-
	Lele02g0669	297	MobiDBLite	consensus disorder prediction	237	258	-	-
	Lele02g0669	297	Gene3D	WRKY domain	153	230	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele02g0669	297	ProSiteProfiles	WRKY domain profile.	172	231	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele02g0669	297	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	253	291	IPR044810	GO:0003700
	Lele02g0669	297	SUPERFAMILY	WRKY DNA-binding domain	168	230	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele02g0669	297	SMART	WRKY_cls	170	230	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele02g0669	297	MobiDBLite	consensus disorder prediction	95	118	-	-
	Lele02g0669	297	Pfam	WRKY DNA -binding domain	172	228	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele02g0669	297	MobiDBLite	consensus disorder prediction	225	258	-	-
	Lele02g0669	297	FunFam	WRKY transcription factor 40	155	232	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele02g0669	Lele-ChrLele02	4022882	4025389	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele02g0669	34	291	WRKY Transcription Factor Family	AT1G80840	45.819	4.31e-66	207

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele02g0669		WRKY	1.8e-23	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele28g0672	28	4312294	4320021	Lele02g0669	02	4022882	4025389	CCT
	Lele25g0682	25	4316513	4317644	Lele02g0669	02	4022882	4025389	CCT
	Lele26g0687	26	4397674	4398963	Lele02g0669	02	4022882	4025389	CCT
	Lele27g1409	27	20371672	20373155	Lele02g0669	02	4022882	4025389	CCT
	Lele02g0669	02	4022882	4025389	Lele03g0676	03	4005715	4013557	hybridization
	Lele02g0669	02	4022882	4025389	Lele04g0683	04	4160702	4162016	hybridization