Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0659 ATGACATTCATATCCGGCGGAGACTGGCAATTTTCGCACACTGCGATCATGAGTAGTCTGGTTGAGAGGCTTCGAGCAAGAACAGATCGCAGGCCCATCTACAGCATTGATGCATCAGACGACGAAGCTGATATTTTGCCCGGAAAACACCAGCCAACTCAGGAAAAGTTCGAGAGGATAGTCAGAAGTGATACGAAAGAAAATTGTTGTCAAGCTTGTGGACAAAATGGAGATCTTTTGAACTGTGAAACATGCACTTATGCCTATCATCCTAGGTGTTTACTTCCACCACCTAGAGCTCCTGTTCCAGACAACTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGATAAGATATTAGACTGTGATATGCGACCTACTGTAGCTGATGACAGTGATACCACAAAACTGGGGTCAAAACAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTGTCATATCTCCATTGCACATGGGTGCCAGAAAAGGAGTTTCTGAAGGCTTTCAAATTACATCCTCGCCTAAAGACAAAAGTAAATAACTTCCATCGTCAAATGTCATCAGTTAATACTTCTGATGAAGACTCTGTTGCCATTCGACCTGAATGGACCACAATTGATCGGATTATTGCTTGCAGGGGTGATGATGATAAGGAATATCTTGTGAAATGGAGAGAGCTTTCATATGATGAATGCTACTGGGAGTTCGAGTCTGATATTTCCGAGTTTCAGGCAGAAATTGAAAGATTCAACAGATTTCAGTCTAGGTGTAGGAAACTTGGTATTTCTGATAAGCAGAAAGGCAGTGTTAAGGATGGAGCAGAATTTATGAGGCATCAGAAAGAATTTCATCAGTATGAACATAGCCCTGAATTTCTTTCAGGGGGTACACTGCATCCATATCAGCTTGAAGGCTTAAACTTTTTACGTTTCTCATGGTCTAAACAAACTCATGTTATACTCGCTGATGAAATGGGACTTGGCAAAACCATACAAAGTATTGCTTTTTTGGCATCACTTTTTGAAGAGAACATTTCTCCACATTTAGTGGTTGCTCCACTTTCTACACTGCGAAATTGGGAACGTGAATTTGCAACATGGGCACCACAAATGAATGTTGTTATGTACGTTGGATCTTCTCAAGCCCGTGCTGTTATACGTGAGTATGAATTTTACTTTCCCAAGAACCAGAAGAAGTTAAAGAGAAAGAAATCTGGTCAAATAGTCAGTGAAAGCAAGCAAGATAGGATCAAATTTGATGTCCTCTTGACATCATATGAGATGATCAACCTTGACACTGCATCATTGAAACCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAATAAGGATTCAAAGTTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTGCTTTTGACTGGGACTCCTCTGCAGAACAACTTGGATGAACTTTTTATGCTTATGCACTTCCTTGACGCTGGGAAGTTTGGAAGTTTAGAGGAATTTCAGGAAGAATTCAAGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCATAAAATGTTGGCCCCCCATCTTCTTAGAAGGGTCAAGAAAGACGTCATGAAGGAGTTACCTCCCAAAAAGGAACTTATTTTACGTGTTGAATTAAGCAGCGAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGTGGAGCTCAGATTTCTCTTATCAATGTTGTGATGGAGTTGCGAAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTTGAGCCAGATATTCAAGATGCAAAAGAATCTTACAAAAAGCTGCTGGAATCATCGGGGAAGTTGCACTTGTTAGACAAAATGATGGTAAAGCTTAAAGAGCAAGGGCATAGAGTCCTCATATATTCACAATTTCAGCACATGTTGGACTTGCTTGAAGATTACTGTTCTTACAAGAATTGGCAGTATGAAAGAATTGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTACGAATAGATCGGTTTAATGCCAAAAATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGGATAAACCTTGCAACAGCTGACACAGTTATTATATACGATAGTGATTGGAACCCTCATGCTGATCTACAAGCTATGGCTAGGGCTCATCGACTTGGACAAACTAATAAGGTAATGATTTATAGGCTTGTAACACGGGGAAGCATTGAGGAGAGAATGATGCAGATGACTCAGAAGAAAATGGTGCTGGAACATCTCGTTGTAGGGAGGCTAAAATCTCAAAATATTAACCAGGAGGAATTGAATGATATTATAAGGTATGGCTCCAAGGAGTTATTTGCTGATGAGAACGATGAAGCAGGCAAATCACGCCAAATTCATTATGATGATGCTGCCATAGATAGATTGCTGGATCGTGAACAAGTTGGTGATGAAGATGCTACAATGGATGATGAAGAGGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTTGAATATGTTGACGAAGTTGAGGCTGCAGCCGAGGAGGCAGCAAAAAAGCGAGCTATGGAGAATGAATCTGCCGTGGCAAGTACAGAAAGAGCAAAATACTGGGAGGAGTTGTTAGGAGATAGATATGAAATGCATAAAGTTCAAGAGTTGGATGCCTTGGGCAAAGGGAAGCGGAGTCGTCACAAACAGATGGTCTCTGTTGAGGATGATGATCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGATGACAATGCTGATGCGGAGCTTACTGATGGTGATTCAAATTCAAATGGAACTATTTCTAAAAGACCTTATAAAAAGAGAGCCCGTGCAGATAGCACAGAGCCGCATCCTCTGATGGAAGGTGAAGGAAAATCATTTCGAGTGCTTGGTTTTAATCAGAATCAGAGAGCTGCATTTGTGCAGATTCTGATGAGGTTTGGGATGGGTGATTATGATTGGAAGGAATTCACTTCCCGAATGAAACAGAAGACTTATGAAGAAATCAAAGACTACGGAATCCTTTTCCTAAATCATATTATTGAAGATATAACTGATGCCTCTACATTCTCAGATGGTGTTCCAAAAGAAGGACTTAGAATGCAAGATGTACTTGTGAGGATTGCAATTCTGGGCTTGATAAGGGAAAATGTGAAGTTTGCATCTGAAAACCCTGGGACTCCACTTTTTTCAGATGAAATCTTATTTCGGTATCCTAGTTTGAAGGGTGCGAAGTTTTGGAAGGAGGAGCATGATTTAGTGCTGCTGCGTGCTGTGTTGAAGCACGGATATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCATGAGATCATCTGTCAGGAGTTGAACCTTCCCTTTATAAATTTACCGGTACCAGGACAACTAGGCTCTCAGGCACAAAATAGTGCAAATTTGTCCAACGCAGAAGCAATTAGCAATCAATATCAGGAAAATGATGGGGGTGACAAAGCAGCTGATGGTGCACTTGGTTCTGGTGACGCTAGGAGTCAAACACTCTTATATCAAGAGTCGTCTGTATTATATCGTTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTGCTTCTCTTGGAAAAAGGGATCAACGCAGAGTACCAGAAAGAATGCTTAGGAGAAGTAAAAGTAAATGAAGTAACAAACAATGGACTTAATTGTGAACCCAAGGCTGCAAGTATACCTAGTAATAAATCAGGGAAGACAGACACCCAAATGTCTGATCAACTGCCTCAAGTGGAAGCAATAGCTTCAGACAAGATTTCTGTTGCTGATAGTGATCCAAATCGTTTGGAATTGATTCGGCTTTACAATGAGATGTGTAAAGTCATGGACGAAAACACAAATGCAAGAAAGCCGGCAGAAGTAGACTTGAAGAACTTGCTGACAATAGAGCCCATTTGTGAAGAAATCGATAGAATTCTAACACCCTCACACCAAAGTCACCCTTCTGAAGAAAAGCCGCCATTGATTCCAGAGAATAAATCAGACGTTTCGCCACAAAATGAAATCGTGGTTTCTCAAGATGCCAAACCTAAATCAGCAGGTGACGAGAGAACAGACATGGTAATGGAGTGTCAACTTACAGAAGAAAACAGCGCGGACCCTGTCGAAGAGAAGGAAACGCCAAGTGTTAGGGGAAGTGATGTAGAAATGGTTGAAGCTGAGAATGATGCTGAACTGAATCAGAAGAAAGAAAAATCTGACGCAGAGGCTATCTCGTTGGATGATTAA 4326 0.4075 MTFISGGDWQFSHTAIMSSLVERLRARTDRRPIYSIDASDDEADILPGKHQPTQEKFERIVRSDTKENCCQACGQNGDLLNCETCTYAYHPRCLLPPPRAPVPDNWRCPECVSPLNDIDKILDCDMRPTVADDSDTTKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKLHPRLKTKVNNFHRQMSSVNTSDEDSVAIRPEWTTIDRIIACRGDDDKEYLVKWRELSYDECYWEFESDISEFQAEIERFNRFQSRCRKLGISDKQKGSVKDGAEFMRHQKEFHQYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSQARAVIREYEFYFPKNQKKLKRKKSGQIVSESKQDRIKFDVLLTSYEMINLDTASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSEQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIQDAKESYKKLLESSGKLHLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLVTRGSIEERMMQMTQKKMVLEHLVVGRLKSQNINQEELNDIIRYGSKELFADENDEAGKSRQIHYDDAAIDRLLDREQVGDEDATMDDEEDGFLKAFKVANFEYVDEVEAAAEEAAKKRAMENESAVASTERAKYWEELLGDRYEMHKVQELDALGKGKRSRHKQMVSVEDDDLAGLEDVSSDGDDNADAELTDGDSNSNGTISKRPYKKRARADSTEPHPLMEGEGKSFRVLGFNQNQRAAFVQILMRFGMGDYDWKEFTSRMKQKTYEEIKDYGILFLNHIIEDITDASTFSDGVPKEGLRMQDVLVRIAILGLIRENVKFASENPGTPLFSDEILFRYPSLKGAKFWKEEHDLVLLRAVLKHGYGRWQAIVDDKDLKIHEIICQELNLPFINLPVPGQLGSQAQNSANLSNAEAISNQYQENDGGDKAADGALGSGDARSQTLLYQESSVLYRFRDMQRRQVEFIKKRVLLLEKGINAEYQKECLGEVKVNEVTNNGLNCEPKAASIPSNKSGKTDTQMSDQLPQVEAIASDKISVADSDPNRLELIRLYNEMCKVMDENTNARKPAEVDLKNLLTIEPICEEIDRILTPSHQSHPSEEKPPLIPENKSDVSPQNEIVVSQDAKPKSAGDERTDMVMECQLTEENSADPVEEKETPSVRGSDVEMVEAENDAELNQKKEKSDAEAISLDD 1441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0659 1441 ProSiteProfiles Zinc finger PHD-type profile. 67 114 IPR019787 -
Lele02g0659 1441 Pfam SNF2-related domain 320 602 IPR000330 GO:0005524|GO:0140658
Lele02g0659 1441 CDD CD1_tandem 114 188 - -
Lele02g0659 1441 ProSiteProfiles Chromo and chromo shadow domain profile. 208 256 IPR000953 -
Lele02g0659 1441 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 70 1391 - -
Lele02g0659 1441 MobiDBLite consensus disorder prediction 903 973 - -
Lele02g0659 1441 Pfam CHD subfamily II, SANT-like domain 952 1083 IPR009462 GO:0003677|GO:0006338
Lele02g0659 1441 MobiDBLite consensus disorder prediction 903 919 - -
Lele02g0659 1441 CDD SF2_C_SNF 623 749 - -
Lele02g0659 1441 Gene3D - 114 211 - -
Lele02g0659 1441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 113 IPR013083 -
Lele02g0659 1441 Gene3D - 294 544 IPR038718 -
Lele02g0659 1441 SMART ultradead3 298 511 IPR014001 -
Lele02g0659 1441 Pfam CHD subfamily II, DUF1087 859 921 IPR009463 -
Lele02g0659 1441 SMART DUF1087_2 858 924 IPR009463 -
Lele02g0659 1441 ProSiteProfiles Rubredoxin-like domain profile. 77 121 IPR024934 GO:0005506
Lele02g0659 1441 Pfam Helicase conserved C-terminal domain 626 738 IPR001650 -
Lele02g0659 1441 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 314 500 IPR014001 -
Lele02g0659 1441 Pfam PHD-finger 70 112 IPR019787 -
Lele02g0659 1441 CDD CD2_tandem 206 256 - -
Lele02g0659 1441 SMART DUF1086_2 933 1086 IPR009462 GO:0003677|GO:0006338
Lele02g0659 1441 Gene3D - 212 256 - -
Lele02g0659 1441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 535 IPR027417 -
Lele02g0659 1441 Gene3D - 1053 1225 - -
Lele02g0659 1441 MobiDBLite consensus disorder prediction 1341 1356 - -
Lele02g0659 1441 MobiDBLite consensus disorder prediction 1397 1441 - -
Lele02g0659 1441 ProSiteProfiles Chromo and chromo shadow domain profile. 116 198 IPR000953 -
Lele02g0659 1441 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 628 787 IPR001650 -
Lele02g0659 1441 SMART PHD_3 69 112 IPR001965 -
Lele02g0659 1441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 537 795 IPR027417 -
Lele02g0659 1441 ProSitePatterns Zinc finger PHD-type signature. 70 111 IPR019786 -
Lele02g0659 1441 SMART helicmild6 654 738 IPR001650 -
Lele02g0659 1441 MobiDBLite consensus disorder prediction 1341 1441 - -
Lele02g0659 1441 SUPERFAMILY Chromo domain-like 82 193 IPR016197 -
Lele02g0659 1441 SUPERFAMILY Chromo domain-like 192 257 IPR016197 -
Lele02g0659 1441 MobiDBLite consensus disorder prediction 956 973 - -
Lele02g0659 1441 MobiDBLite consensus disorder prediction 920 940 - -
Lele02g0659 1441 SMART chromo_7 115 184 IPR000953 -
Lele02g0659 1441 SMART chromo_7 206 259 IPR000953 -
Lele02g0659 1441 Pfam Chromo (CHRromatin Organisation MOdifier) domain 132 172 IPR023780 -
Lele02g0659 1441 Pfam Chromo (CHRromatin Organisation MOdifier) domain 209 256 IPR023780 -
Lele02g0659 1441 Gene3D - 545 769 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0659 Lele-ChrLele02 3948534 3964570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0659 324 765 RAD5 or RAD16-like Gene Family AT1G02670 22.031 2.76e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele02g0659 SNF2_N 3e-66 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0659 02 3948534 3964570 Lele04g0675 04 4086153 4104480 hybridization