Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0657 ATGATGGTGGAGACCAGAATGGATGATCCCAGAGCCCAGTTTCCTGTAGGAATGCGTGTTCTTGCCGTTGACGATGACCCAACTTGTCTTTTCGTGTTGGAAACTCTTCTTCGAAGATGCCAATATAACGTGACGACAACTAGTCAGGCAATAACGGCATTGAAGTTGTTGAGAGAGAACAAAAATAAGTTTGACCTGATTATCAGTGATGTTCATATGCCAGACATGGATGGATTTAAGCTACTCGAGCTTGTAGGACTTGAGATGGACTTGCCAGTCATAATGTTGTCAGCATATGGTGACCCAAAGCTAGTGATGAAGGGAATTACTCATGGAGCGTGTGACTATCTGTTGAAACCTGTTCGAATGGAAGAGCTAAAGAACATTTGGCAGCATGTGATCAGGAGGAAGAGGTTTGACTCTAAGGAGCAGAACAACCCCCACGACCAAGACAAGCCTCATGCTGGTAGTGACAGCTTTCTAGCGTCAGCAGGAACAAGCAATATAGATCAAAAGATGACCAAGAAAAGGAAGGATCAGAATGATGAAGATGAGGACCAAGATGAGGACCCCTCGACCCAGAAGAAGACTCGGGTTGTCTGGACAGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAGGCTGTACCCAAAAAGATTCTTGATTTGATGAATGTTGAAAAGCTTACTAGGGAGAATGTGGCTAGCCATCTCCAGAAATATAGGCTTTATCTGAAAAGAATCAGTTGTGTGGCGAACCAACAGGCTAATCTGGTGGCAGCCTTAGCTGAAGAAATCCCTTTGAGACAAGGTCAAGGGTATATCATAGACCAGCAGAAGGCGCAACAGAGTGGCGTCTCTAACAATATTGGTTCACTGGATGACTTGGTCGGTTCAATGATGAGACAGGATGAAGACAAAGTGAAATTATTGGATGGAGAATTAATATGTAATAATTACAGCGTAGGTACATCTATGTGA 999 0.4394 MMVETRMDDPRAQFPVGMRVLAVDDDPTCLFVLETLLRRCQYNVTTTSQAITALKLLRENKNKFDLIISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDPKLVMKGITHGACDYLLKPVRMEELKNIWQHVIRRKRFDSKEQNNPHDQDKPHAGSDSFLASAGTSNIDQKMTKKRKDQNDEDEDQDEDPSTQKKTRVVWTVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANLVAALAEEIPLRQGQGYIIDQQKAQQSGVSNNIGSLDDLVGSMMRQDEDKVKLLDGELICNNYSVGTSM 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0657 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 252 IPR017930 -
Lele02g0657 332 Gene3D - 17 155 - -
Lele02g0657 332 MobiDBLite consensus disorder prediction 140 196 - -
Lele02g0657 332 Gene3D - 192 255 - -
Lele02g0657 332 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 282 IPR045279 GO:0009736
Lele02g0657 332 SMART REC_2 18 130 IPR001789 GO:0000160
Lele02g0657 332 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Lele02g0657 332 PIRSF RR_ARR_type-B 1 329 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lele02g0657 332 CDD REC_typeB_ARR-like 20 134 - -
Lele02g0657 332 SUPERFAMILY CheY-like 17 142 IPR011006 -
Lele02g0657 332 Pfam Myb-like DNA-binding domain 198 248 IPR001005 -
Lele02g0657 332 FunFam Two-component response regulator 192 255 - -
Lele02g0657 332 SUPERFAMILY Homeodomain-like 193 253 IPR009057 -
Lele02g0657 332 MobiDBLite consensus disorder prediction 140 155 - -
Lele02g0657 332 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Lele02g0657 332 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 196 249 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0657 Lele-ChrLele02 3932593 3936180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0657 13 262 Response Regulator Gene Family AT2G25180 72.763 7.84e-119 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele02g0657 Response_reg 3.2e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0670 25 4217631 4219347 Lele02g0657 02 3932593 3936180 CCT
Lele26g0679 26 4318307 4321315 Lele02g0657 02 3932593 3936180 CCT
Lele27g1419 27 20457429 20460449 Lele02g0657 02 3932593 3936180 CCT