Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0652 ATGGGCCTTACAATCAGGCCATGCCCAAAGGTGGGTGAGTTCCTGAGGCCCCAAGGAGACAGAATTTGGAATCACGGCATGCTGAATGCCGTATTGCATGCTGCTACTGCATCAGGTCGTCCACGAACTCTCACCATGTGTTCTTCTTGGCACATTGAGAAAATGAAGCTTCTTTTGTTGTTCCCTTTTCTTGAAGGCCCCATTTGGGTTTCTGTTGCGGCGGAACCCCCCTTTCTGTCACCTAGAGTCTCACCTTTGTCCCCAGCCTCAATGGCGGCATTTTCTCCAGATATTCAGGTGGAGAATGAATGGAACCGAACAGATTCAGGCATGAAAGTGCTAATAGCTCTCATCGTAGCCGGCACTGCACTTGGTGCAGTCATCTTATCGCTCTTATGCTTCTGCGTTTGCAACAAGAAGTCTTCATCCAAATTCAACTGCAAAAATGTCCGAAGCTCAGATGTGGAGAAAGGGCTTGCGAGAACCCCATTTACGAGAAAATCTAGTTCACTCAAGGTAGATGGCAAGATGGGGTCTATTTCAATATTTGATCATAAGACAATAGCAAAAGCGACGAACAATTTTCTGGAAAGTAACATACTGGGAGAGGGCGGATTTGGATGCGTTTACAAGGCTCGATTCCATAATAACTTGGATGTTGCCGTCAAGAAGTTGCAGTGTGAAAGTCAGGACGCTCAGAGAGAGTTTCAGAACGAGGTGGACTTGTTAAGTAAAATTCAGCATCCAAATATAATCTCTTTGCTGGGGTTTAGCAGTAATGGCGACACGAGGTTTATTGTCTACGAATTGATGCAAAATGGATCATTGGAGACTCAATTACATGGACCCTCTCATGGCTCGGCGTTGACTTGGCACTTGAGGATGAAGATTGCTCTTGACACAGCAAGAGGATTAGAATATCTGCATGAAGTCTGCAACCCCCCAGTGATTCATAGAGATCTAAAATCATCTAATATTCTTTTAGACGCAAATTTCAGTGCCAAGCTGTGTGATTTCGGTCTTGCTATAGTTGATGGGTCCCAAGACAAGAAAGAGATAAAACTCTCGGGCACATTGGGATATGTAGCTCCGGAGTATATATTAGATGGTAAATTAACTGATAAAAGCGATGTGTATGCATTTGGAGTTGTGCTTCTAGAACTTGTATTGGGGAGGAAGCCGGTGGAAAAGCTAACAGCAACACAGTGCCATTCTATTGTCACATGGGCGATGCCACAGCTCACCGACAGATCCAAGCTTCCCGGCATTGTGGATCCCATGATCAAGAATACAATGAATCTGAAGCATTTATATCAGGTTGCTGCCGTGGCGGCGCTGTGCGTGCAACCAGAACCGAGTTATCGTCCGCTGATTACAGATGTTCTGCACTCTCTCATCCCTCTTGTTCCTGTAGAGCTTGGAGGAACACTCAGAGCTCCGCAAGCGTCACAGCCTCTTTCTTCAACATAA 1470 0.4565 MGLTIRPCPKVGEFLRPQGDRIWNHGMLNAVLHAATASGRPRTLTMCSSWHIEKMKLLLLFPFLEGPIWVSVAAEPPFLSPRVSPLSPASMAAFSPDIQVENEWNRTDSGMKVLIALIVAGTALGAVILSLLCFCVCNKKSSSKFNCKNVRSSDVEKGLARTPFTRKSSSLKVDGKMGSISIFDHKTIAKATNNFLESNILGEGGFGCVYKARFHNNLDVAVKKLQCESQDAQREFQNEVDLLSKIQHPNIISLLGFSSNGDTRFIVYELMQNGSLETQLHGPSHGSALTWHLRMKIALDTARGLEYLHEVCNPPVIHRDLKSSNILLDANFSAKLCDFGLAIVDGSQDKKEIKLSGTLGYVAPEYILDGKLTDKSDVYAFGVVLLELVLGRKPVEKLTATQCHSIVTWAMPQLTDRSKLPGIVDPMIKNTMNLKHLYQVAAVAALCVQPEPSYRPLITDVLHSLIPLVPVELGGTLRAPQASQPLSST 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0652 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Lele02g0652 489 PANTHER OS01G0750732 PROTEIN 95 468 - -
Lele02g0652 489 ProSiteProfiles Protein kinase domain profile. 195 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele02g0652 489 FunFam probable receptor-like protein kinase At1g80640 271 470 - -
Lele02g0652 489 ProSitePatterns Protein kinases ATP-binding region signature. 201 224 IPR017441 GO:0005524
Lele02g0652 489 FunFam Protein kinase superfamily protein 162 270 - -
Lele02g0652 489 CDD STKc_IRAK 201 468 - -
Lele02g0652 489 Gene3D Transferase(Phosphotransferase) domain 1 271 470 - -
Lele02g0652 489 Coils Coil 215 235 - -
Lele02g0652 489 Pfam Protein kinase domain 198 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele02g0652 489 SMART serkin_6 195 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele02g0652 489 SUPERFAMILY Protein kinase-like (PK-like) 175 465 IPR011009 -
Lele02g0652 489 Gene3D Phosphorylase Kinase; domain 1 166 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0652 Lele-ChrLele02 3890440 3894033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0652 114 469 Receptor kinase-like Gene Family AT3G58690 43.902 5.93e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Lele02g0652 Pkinase 2.1e-49 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0661 25 4159275 4161725 Lele02g0652 02 3890440 3894033 CCT
Lele26g0670 26 4258306 4261157 Lele02g0652 02 3890440 3894033 CCT
Lele27g1426 27 20514280 20517132 Lele02g0652 02 3890440 3894033 CCT
Lele02g0652 02 3890440 3894033 Lele04g0670 04 4041032 4044615 hybridization