Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0619 ATGCTAGGAACGACTTCTCTAACAAATTTCATTTGCAGACTCTTCGAACCCCAAATCAGTCTTCTCGTCCAACTCTTCGCGCGGTGGTTGGATTTGCAGAATATGGGAGAAACAAAGGATGAAGGATACGAGGAAGAGCTCCTTGACTATGAAGAGGAAGAAGACAAAGCCCCTGATTCTGTCGGAACCAAAGTCAACGGTGAAGCTGTCAAGAAGGGCTACGTTGGGATTCACAGTTCGGGATTCAGAGACTTTCTTCTGAAGCCAGAGCTTCTTCGTGCCATTGTAGACTCGGGATTTGAGCATCCTTCTGAAGTACAACATGAATGCATTCCTCAAGCAATCCTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTTGTTCTCTCAACCTTGCAGCAGATCGATCCTGTTGCAGGCCAAGTTGCTGCCCTTGTTCTATGTCATACAAGGGAATTAGCATACCAGATATGCCACGAGTTCGAGAGGTTCAGTACCTACTTGCCTGATCTCAAGGTTGCTGTCTTCTATGGTGGTGTCAACATTAAAGTTCACAAGGACCTGTTGAAGAATGAGTGTCCTCATATTGTTGTCGGAACACCTGGAAGAATACTAGCATTGGCCAGGGATAAGGATCTTTCATTAAAGAATGTCAGGCATTTTATTTTGGATGAGTGTGATAAGATGCTGGAATCACTGGACATGAGGAGAGATGTGCAAGAGATCTTCAAGATGACTCCTCATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAGTTTATGCAAGATCCAATGGAAATTTATGTTGATGACGAGGCCAAGCTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAAGAGAAGAACCGGAAGTTGAATGATCTTCTTGATGCACTAGACTTCAACCAAGTTGTTATCTTTGTGAAGAGTGTCAGTAGAGCAGCTGAGCTTGACAGACTACTTGTGGAGTGTAACTTCCCATCTATATGCATCCACTCTGGCATGTCACAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTTAAGGAGGGGCATACCAGGATTCTTGTGGCAACAGACTTGGTTGGGAGGGGAATTGACATTGAACGTGTTAATATTGTAATAAACTATGACATGCCTGATTCTGCAGACACTTATTTGCACAGGGTTGGCAGAGCTGGAAGGTTTGGCACCAAAGGTCTTGCAATTACATTTGTTTCATGTGCTGCTGATGTTGATGTTCTTAACAATGTTCAGTCAAGGTTCGAAGTTGATATAAAGCAGCTTCCGGAACAGATTGATACCTCTACATACATGCCGTCATAG 1386 0.4336 MLGTTSLTNFICRLFEPQISLLVQLFARWLDLQNMGETKDEGYEEELLDYEEEEDKAPDSVGTKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDRLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0619 461 FunFam DEAD-box ATP-dependent RNA helicase 293 461 - -
Lele02g0619 461 FunFam DEAD-box ATP-dependent RNA helicase 56-like 68 286 - -
Lele02g0619 461 Pfam Helicase conserved C-terminal domain 310 417 IPR001650 -
Lele02g0619 461 CDD SF2_C_DEAD 297 426 - -
Lele02g0619 461 CDD DEADc_DDX39 79 286 - -
Lele02g0619 461 SMART ultradead3 99 300 IPR014001 -
Lele02g0619 461 Gene3D - 76 292 IPR027417 -
Lele02g0619 461 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 284 IPR014001 -
Lele02g0619 461 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 296 457 IPR001650 -
Lele02g0619 461 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 79 435 - -
Lele02g0619 461 Pfam DEAD/DEAH box helicase 105 270 IPR011545 GO:0003676|GO:0005524
Lele02g0619 461 Gene3D - 293 460 IPR027417 -
Lele02g0619 461 SMART helicmild6 336 417 IPR001650 -
Lele02g0619 461 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 108 IPR014014 GO:0003724
Lele02g0619 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 428 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0619 Lele-ChrLele02 3709409 3714402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0619 35 461 Eukaryotic Initiation Factors Gene Family AT5G11200 83.582 0.0 759