Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0599 ATGCGGTTCTTCCTCTTCCTCCCTCTCTACCTACGGCGTCTCTCTTTGTCGTTTGCTTCTGTCTTCTGTGGCAACACGATTGAAGTCCTTCGCTCTAGCGGCTTCCACATCGTTGAGAGCCCGAACAAGTCATTTCCTGAGCGTATCCCTCCTTGTTGTCTTCTTACCGAGTCACGCTTTGGTTTCAACAGCATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCCACGATTACCTAGTTAAGAGGGATTTGAAGGCTTCTGCCCAGGCTTTTCAAGCTGAAGGAAAAGTGTCCTCGGATCCCGTTGCTATTGATGCCCCGGGAGGATTTCTGTTCGAGTGGTGGTCCGTATTCTGGGATATATTTATCGCCAGGACTAATGAGAAGCACTCAGAAGTCGCTGCATCTTATATTGAGACACAGTTAATTAAGGCTAGGGAACAACAGCAGCAACAACAGCAGCCGCAACAGCCACAGCCACAGCCACAATCCCAGCAATCGCAACATCAGCAGCACATGCAGATGCAGCAATTCCTGTTACAGAGGCATGCACAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCCATCACAACCACAGCAACAGCAGCAGCCACCTCCCCAACAGCAGCAGAGAAGAGATGGGGCTCATCTATTAAATGGCAGTACAAACGGGTTAGTTGGAAACCCTAGCACTGCAAATGCCATGGCAACAAAGATGTATGAAGAGAGGTTAAAACCTCCCCTTCAGAGGGATTCTTTGGATGATGCAGCCATGAAGCAAAGATTTGGTGACAACATGGGCCAACTCTTGGATCCAAATCATGCCTCAATAATGAAGTCAGCTGCAGCTTCTGGCCAGTCTTCAGGACAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCAACAAGCTCAAGCTCGTAGTCAGCAATTGCCAGGGGCTACTCCAGATATAAAGAGTGAGATTAATCCTGTTTTGAATTCAAGAGTTGCAGGTCCTGAAGGATCGTTAATGGGAATTCCTGGATCAAATCAGGGGAGCAACAATTTGACTCTGAAAGGATGGCCACTTACAGACTTGGAACAACTGCGCTCTGGTATTCTTCATCAACAAAAGCCTTTTATACAGCCTCCTCAACCCCTTCATCAGCTACAAATGTTGACACCTCACCATCAACAGCAGCTTATGCTTGCCCAGCAAAATTTGTCATCCCCTTCTGCCAGTGATGAGAATAGAAAACTGAGAATGCTACTGAGTCAAAGGAATATGGGCCTAAATAAGGACGGCCTTTCAAATCCTGTTGATGTGGTTCCAAATGTTGGATCACCTCTTCAAGCTGGTGGCCCTCTTTTGCCTCGTGGGGATACAGATATGCTAATGAAGTTAAAATTGGCTCAAATTCAGCAACAACATCAACAGCAACAGAGCAACAATCCCCAGCAGCAGCAGCTTCAACAGCATGTTCTATCAAATCAGCAGCCTCAGACTTCAAACCATAATATGCATCAGCTAGATAAAATGGGGGGTGGTGGCAGTGTCACTATGGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAACCAGACTGGGAGAAAAAGAAAGCAGCCTGTATCTTCTTCAGGTCCGGCAAATAGTTCTGGAACAGCCAATACAGCAGGTCCATCTCCAGGTTCTGCACCCTCAACTCCCTCGACTCATACACCTGGAGATGTGATATCAATGCCTGCTTTGCCTCATAGTGGTAGTTCTTCAAAGCCTTCAATTATGTTCAGCACTGATGGTACTGGAACTCTTACATCACCTTCAAACCAGTTGGCTGATATGGATCGTTTTGTGGAGGATGGATCACTTGATGACAATGTTGAGTCTTTTTTGTCACATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGAAGTAAATTCTGTACAAGCAAGCACAAGCAAAGTTGTTTGCTGCCACTTTTCATCTGATGGGAAATTGCTTGCAAGTGGTGGCCATGACAAGAAGGCTGTATTATGGCACACAGATTCCTTAAAGCAAAAGGCCACTCTAGAAGAACATTCATCTATGATCACTGACGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATTTGATAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGATATACAATTCGCACCTTTACCGGACATTCTGGATCTGTTATGTCTTTAGATTTTCACCCAAATAAGGATGATCTGATCTGCTCATGTGATGGTGATGGTGAGATACGATATTGGAGTATAACCAATGGTAGCTGTGCTAGGGTCGCGAAGGGTGGTACTGCCCAGATGAGATTTCAACCTCGTATGGGGAGGTACCTTGCTGCAGCTGCAGAAAATGTTGTCTCTGTACTTGATGTGGAGACACAACAATGCCGATATTCATTACAGGGGCATATAAAGCCAATACATTCTGTCTGCTGGGACCCCACAGGAGAGTTACTGGCATCTGTGAGTGAGGACTCGGTCAGGGTCTGGACTCTTGGGACAGGGAGTGGAGGAGAATGTGTTCATGATCTAAGCTGTAACGGCAACAAGTTCCACTCGTGTGTTTTCCATCCGACTTATTCTTCCTTGCTGGTCATTGGCTGTTACCAGTCTTTAGAGCTTTGGAATATGGCGGAGAACAAGACAATGACTCTATCTGCCCATGAAGGTCTCATTGCTGCCTTGGCAGTGTCTCCGTTGACTGGTTTGGTTGCTTCAGCTAGTCATGACAAGTTCGTCAAGCTCTGGAAATAA 2856 0.4615 MRFFLFLPLYLRRLSLSFASVFCGNTIEVLRSSGFHIVESPNKSFPERIPPCCLLTESRFGFNSMSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQPQQPQPQPQSQQSQHQQHMQMQQFLLQRHAQQQQQQQQQQQQQQPSQPQQQQQPPPQQQQRRDGAHLLNGSTNGLVGNPSTANAMATKMYEERLKPPLQRDSLDDAAMKQRFGDNMGQLLDPNHASIMKSAAASGQSSGQVLHGAAGGMSQQAQARSQQLPGATPDIKSEINPVLNSRVAGPEGSLMGIPGSNQGSNNLTLKGWPLTDLEQLRSGILHQQKPFIQPPQPLHQLQMLTPHHQQQLMLAQQNLSSPSASDENRKLRMLLSQRNMGLNKDGLSNPVDVVPNVGSPLQAGGPLLPRGDTDMLMKLKLAQIQQQHQQQQSNNPQQQQLQQHVLSNQQPQTSNHNMHQLDKMGGGGSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPGSAPSTPSTHTPGDVISMPALPHSGSSSKPSIMFSTDGTGTLTSPSNQLADMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEVNSVQASTSKVVCCHFSSDGKLLASGGHDKKAVLWHTDSLKQKATLEEHSSMITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYTIRTFTGHSGSVMSLDFHPNKDDLICSCDGDGEIRYWSITNGSCARVAKGGTAQMRFQPRMGRYLAAAAENVVSVLDVETQQCRYSLQGHIKPIHSVCWDPTGELLASVSEDSVRVWTLGTGSGGECVHDLSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMAENKTMTLSAHEGLIAALAVSPLTGLVASASHDKFVKLWK 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0599 951 Gene3D - 643 800 IPR015943 GO:0005515
Lele02g0599 951 ProSiteProfiles Trp-Asp (WD) repeats profile. 752 794 IPR001680 GO:0005515
Lele02g0599 951 Gene3D - 801 951 IPR015943 GO:0005515
Lele02g0599 951 MobiDBLite consensus disorder prediction 522 582 - -
Lele02g0599 951 CDD WD40 663 951 - -
Lele02g0599 951 ProSitePatterns Trp-Asp (WD) repeats signature. 728 742 IPR019775 -
Lele02g0599 951 SMART Lish 72 104 IPR006594 GO:0005515
Lele02g0599 951 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 752 790 - -
Lele02g0599 951 ProSiteProfiles Trp-Asp (WD) repeats profile. 919 951 IPR001680 GO:0005515
Lele02g0599 951 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 919 951 - -
Lele02g0599 951 MobiDBLite consensus disorder prediction 151 240 - -
Lele02g0599 951 Pfam WD domain, G-beta repeat 706 741 IPR001680 GO:0005515
Lele02g0599 951 Pfam WD domain, G-beta repeat 748 785 IPR001680 GO:0005515
Lele02g0599 951 Pfam WD domain, G-beta repeat 914 951 IPR001680 GO:0005515
Lele02g0599 951 Pfam WD domain, G-beta repeat 829 864 IPR001680 GO:0005515
Lele02g0599 951 Pfam WD domain, G-beta repeat 672 698 IPR001680 GO:0005515
Lele02g0599 951 MobiDBLite consensus disorder prediction 475 511 - -
Lele02g0599 951 SUPERFAMILY WD40 repeat-like 661 951 IPR036322 GO:0005515
Lele02g0599 951 MobiDBLite consensus disorder prediction 590 616 - -
Lele02g0599 951 ProSiteProfiles Trp-Asp (WD) repeats profile. 667 708 IPR001680 GO:0005515
Lele02g0599 951 FunFam Transcriptional corepressor LEUNIG 795 951 - -
Lele02g0599 951 ProSiteProfiles LIS1 homology (LisH) motif profile. 72 104 IPR006594 GO:0005515
Lele02g0599 951 ProSiteProfiles Trp-Asp (WD) repeats profile. 709 744 IPR001680 GO:0005515
Lele02g0599 951 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 709 744 - -
Lele02g0599 951 SMART WD40_4 827 865 IPR001680 GO:0005515
Lele02g0599 951 SMART WD40_4 912 951 IPR001680 GO:0005515
Lele02g0599 951 SMART WD40_4 702 741 IPR001680 GO:0005515
Lele02g0599 951 SMART WD40_4 871 910 IPR001680 GO:0005515
Lele02g0599 951 SMART WD40_4 745 785 IPR001680 GO:0005515
Lele02g0599 951 SMART WD40_4 660 699 IPR001680 GO:0005515
Lele02g0599 951 ProSiteProfiles Trp-Asp (WD) repeats profile. 834 866 IPR001680 GO:0005515
Lele02g0599 951 Pfam LisH 74 100 IPR006594 GO:0005515
Lele02g0599 951 PANTHER TRANSCRIPTION ACTIVATOR MSS11 65 951 - -
Lele02g0599 951 MobiDBLite consensus disorder prediction 475 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0599 Lele-ChrLele02 3588250 3597596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0599 746 950 Miscellaneous Gene Families AT5G08390 24.762 5.11e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lele02g0599 WD40 0.023 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1487 27 20909923 20912034 Lele02g0599 02 3588250 3597596 CCT
Lele28g0596 28 3814586 3816741 Lele02g0599 02 3588250 3597596 CCT
Lele25g0594 25 3774568 3781852 Lele02g0599 02 3588250 3597596 CCT
Lele26g0608 26 3879238 3889134 Lele02g0599 02 3588250 3597596 CCT
Lele02g0599 02 3588250 3597596 Lele03g0612 03 3598226 3605464 hybridization
Lele02g0599 02 3588250 3597596 Lele04g0617 04 3728120 3735580 hybridization