Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0580 ATGGTCTTCAACCGGCAGCCTTCGACTCAGGTAGAAGTCGAAAAGATGGCGGATGACAAAGGAGTTGGAAAAGATGAAAAGGAAGAGACTATTTCTACTGCCACTGGGGATAGAAAGAAGCGCAAGGGACTTTTTTCAAGGATTTGGAATGCAATATTTAGATCACATGGGGATGATTTTGAAAAGAGACTAGAATTCATTTCTAAAGAAGAAGCTGTTGTTCTGGCTAGGATGAGTAGGAGATCTCGATCTTGGAGGCGAACAACCCGGCATCTTGTTTTATTTTCTGTTATATTTGAGGTCATTGCTGTAAGTTATGCCATAATGACAAGATCAAAAGATATCAATTTGAAGATGAGAGCGATCCGGATTTTGCCAATGTTCCTTTTGCCTGCCGTATCAACTGCTGCCTATTCAACATTTATCAGCTTTGCAAGGATATTTGATCGAAGGGACCAGAAAATTCTTGAAAGACTAAGAGCTGAAAGGCAAGCAAAAATTGATGAGCTTAAAGAGAAGACAAATTATTACATTACTCAGCAGCTTATTCAGGTAACTTTTGACAATACCTTAGGCACTGCTTTACTATTGTGTTTACCTAGCTTGCGGTCTATTCAGAAATACGACCCAGACCCAGCAGCAAAGGCAGCGGCTGCAACTGTTTTGGCAACTAAGTTGGGTGCTGATTCAGGATTGAAAGTGCATGTTGGAGACGAATCAAAGCATGGTGGTTCAACAGGGAAGAGCAAGGATCATGAACTTATTGAATCCAGTGGACTTCGAAGTCGCAAACAAGTGATTTCTAGATCCACTAGTCCTGGGACAACTACACCAACGAATTCTAATCAACAATTTGTTGGTTCTGGAAGTATTGATCAATCTCAAATTTCTATGCATGACGGGGGATGGATTGCTCGAATTGTGGGATTGCTTGTGGGTGAGGATCCAAGGCAGTCTTATGCTCTCATATGTGTTAACTGCCATATGCATAATGGTCTTGCTCAGAAGGCGGATTTCCCGTATATTACTTACTATTGCCGGCACTGCCATGCCCTGAACAAACCGAAGCAATTGGGCGAGCACATCTCTGGTTCCAGTTCCCAAAATATTGGGTATCCAAAAGCAGACGAGGTAGCTCAAAATTCTAGTGCTTCTACAGATGAGAGCATAATTGCAAACAACAGTCCTGTAAATGCTAGCCTTGAGATGGAGGAAGTATCCAAAAAAGCGGGTTTGGAAGAGAAAGTTGGTTGA 1254 0.4203 MVFNRQPSTQVEVEKMADDKGVGKDEKEETISTATGDRKKRKGLFSRIWNAIFRSHGDDFEKRLEFISKEEAVVLARMSRRSRSWRRTTRHLVLFSVIFEVIAVSYAIMTRSKDINLKMRAIRILPMFLLPAVSTAAYSTFISFARIFDRRDQKILERLRAERQAKIDELKEKTNYYITQQLIQVTFDNTLGTALLLCLPSLRSIQKYDPDPAAKAAAATVLATKLGADSGLKVHVGDESKHGGSTGKSKDHELIESSGLRSRKQVISRSTSPGTTTPTNSNQQFVGSGSIDQSQISMHDGGWIARIVGLLVGEDPRQSYALICVNCHMHNGLAQKADFPYITYYCRHCHALNKPKQLGEHISGSSSQNIGYPKADEVAQNSSASTDESIIANNSPVNASLEMEEVSKKAGLEEKVG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0580 417 MobiDBLite consensus disorder prediction 12 33 - -
Lele02g0580 417 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 38 402 IPR040115 GO:0071786
Lele02g0580 417 MobiDBLite consensus disorder prediction 261 286 - -
Lele02g0580 417 MobiDBLite consensus disorder prediction 1 33 - -
Lele02g0580 417 MobiDBLite consensus disorder prediction 360 397 - -
Lele02g0580 417 MobiDBLite consensus disorder prediction 234 286 - -
Lele02g0580 417 Coils Coil 153 176 - -
Lele02g0580 417 MobiDBLite consensus disorder prediction 234 259 - -
Lele02g0580 417 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 303 353 IPR019273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0580 Lele-ChrLele02 3473484 3476685 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1515 27 21103952 21110293 Lele02g0580 02 3473484 3476685 CCT
Lele28g0565 28 3600458 3608422 Lele02g0580 02 3473484 3476685 CCT
Lele25g0561 25 3568232 3573022 Lele02g0580 02 3473484 3476685 CCT
Lele26g0575 26 3656636 3665724 Lele02g0580 02 3473484 3476685 CCT
Lele02g0580 02 3473484 3476685 Lele25g0549 25 3486098 3490839 CCT
Lele02g0580 02 3473484 3476685 Lele26g0565 26 3591178 3593374 CCT
Lele02g0580 02 3473484 3476685 Lele27g1528 27 21206669 21209995 CCT
Lele02g0580 02 3473484 3476685 Lele28g0555 28 3525372 3528405 CCT
Lele02g0580 02 3473484 3476685 Lele03g0591 03 3485374 3489353 hybridization
Lele02g0580 02 3473484 3476685 Lele04g0596 04 3617856 3621033 hybridization