Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0573 ATGCCGGGTTTGACATGTAATGCTTGCAACAAAGAGTTCAGTGACGATGCTGATCAAAGGCTTCATTACAAATCCGAGTGGCACCGATACAATCTCAAGCGCAAGGTGGCTGGTGTTCCTGGGGTGACAGAAGCACTGTTCTTGGCTAGACAATCTGCAGCTGCTCAAGAGAAAGATAAAAATGAAACTCCCGTGCTCTATAGTTGTGGCATTTGTGGAAAAAGTTATAAAAGTTCAAAGGCTCATGCTGAACATCTCAAATCCCGTGGTCATTTGATGCGGGCATCTGAAGGAAGTAGTCCTTCAGATGACAAGGCAATAGTCAAGCCGCTATCACAACGTGTAGTGAACAGACCTCCTCCCAGAAGAGATGTAGACAATGCTGATAGTGACAGAAGTGAAGATGAATGGGAGGAGGTAGATCCTGAGGATCCTTCGATTAATGATGCTTCAACGTCTTTGACTGGTTTGAGTGTGAATGAACATGACGAGAATGTTGATATGGACAAAGATGATGATGATGATGATTATGTGGATTTGGATCCCTCATGCTGTTTTATGTGTGATCAAAAGCATGATACTCTAGAAAGTTGCATTGTTCACCTGCACAAGCAGCATGGCTTCTTCATTCCAGATGTTGAGTATTTAAAGGATCCAAAAGGCCTTCTTACCTATCTAGGCCTTAAGGTCACGAGGGATTATATGTGTCTTTACTGCAATGATAGATGCCACCCTTTCAGCAGCCTGGAAGCAGTTAGGAAACACATAGCAGCCAAAAGTCACTGTAAAGTGCATTATGGTGATGGCGATGATGACGAGGAAGTGGAGTTGGAAGAATTCTATGATTATAGCAGCAGTTATGTGGATGAGCAAGGGAAGCAACTTGTTGCATTAGAAGAGTCAGCCAACAATATAGAACTTGGCAGTGGTGGGTCAGAACTCGTAATCACTAAGAAATCAAATGATGGAATATCAACTAGAACACTTGGTTCTCGTGAATTTTTCCGTTATTATCGTCAAAAACCCCGCCCATCACCCGCAGATAACATGGCCGTTACTGCTGCATTGGCTTCAAGGTACAGGAGCATGGGTTTGGCGACTGTGCAATCAAGGGAGCAAATGGTGAGGATGAAAGTGCTGAAGGAAATTAACAGGTCGGGAGTGGAAGCCATGCGTTCTAAAATAGGGATGAAAAGTAACGTTATCCGGAACTTGCCAAAGAATGTCCCATATTAG 1236 0.4361 MPGLTCNACNKEFSDDADQRLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSAAAQEKDKNETPVLYSCGICGKSYKSSKAHAEHLKSRGHLMRASEGSSPSDDKAIVKPLSQRVVNRPPPRRDVDNADSDRSEDEWEEVDPEDPSINDASTSLTGLSVNEHDENVDMDKDDDDDDYVDLDPSCCFMCDQKHDTLESCIVHLHKQHGFFIPDVEYLKDPKGLLTYLGLKVTRDYMCLYCNDRCHPFSSLEAVRKHIAAKSHCKVHYGDGDDDEEVELEEFYDYSSSYVDEQGKQLVALEESANNIELGSGGSELVITKKSNDGISTRTLGSREFFRYYRQKPRPSPADNMAVTAALASRYRSMGLATVQSREQMVRMKVLKEINRSGVEAMRSKIGMKSNVIRNLPKNVPY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0573 411 ProSitePatterns Zinc finger C2H2 type domain signature. 69 91 IPR013087 -
Lele02g0573 411 SMART c2h2final6 183 206 IPR013087 -
Lele02g0573 411 SMART c2h2final6 234 261 IPR013087 -
Lele02g0573 411 SMART c2h2final6 4 28 IPR013087 -
Lele02g0573 411 SMART c2h2final6 67 91 IPR013087 -
Lele02g0573 411 PANTHER ZINC FINGER PROTEIN 622 2 410 IPR040025 -
Lele02g0573 411 Gene3D Classic Zinc Finger 4 88 - -
Lele02g0573 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 96 IPR013087 -
Lele02g0573 411 MobiDBLite consensus disorder prediction 83 158 - -
Lele02g0573 411 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Lele02g0573 411 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Lele02g0573 411 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Lele02g0573 411 MobiDBLite consensus disorder prediction 131 145 - -
Lele02g0573 411 SUPERFAMILY beta-beta-alpha zinc fingers 67 96 IPR036236 -
Lele02g0573 411 Pfam C2H2 type zinc-finger (2 copies) 185 286 IPR041661 -
Lele02g0573 411 SUPERFAMILY beta-beta-alpha zinc fingers 170 244 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0573 Lele-ChrLele02 3437750 3440005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0573 1 411 C2H2 Transcription Factor Family AT4G31420 64.183 1.43e-179 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele02g0573 zf-C2H2_2 4.9e-24 CL0361