Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0454 ATGCGTATTCGTACTTCCACGCGTCAGTGGCAGATACGGCGGTTGGCTCCACTTTCAAAAGCAATAAAATACACAATCGCCTTACGAGAATCAAAACCTGATTGGACCACATCTTTGTCGCTGAATGCTGATGTGAATTCAATTCACTCATCAGTACGGTTGCGCAAGTATTCTCGCCACTCGCCATTAGGGTTTACTGGTATGGGGAGAGGGAAGATCGTGATAAGGCGAATCGACAATTCGACGAGCAGGCAGGTGACATTCTCGAAGCGAAGAAATGGTTTACTGAAGAAGGCCAAGGAGCTAGCAATACTGTGCGATGCTGAGGTTGGAGTAATCATCTTCTCCAGCACTGATAAACTCTACGATTTCGCCAGCACCAGCATGAAATCAGTGATCGATCGATACAGCAAAACTAAAGAAGATCAACATCCTCATCTTGGGAGCTCAACGTCTGAAGTGAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACACTTGCAAAACTTGCAAGAAAATCACCGGCAAATGACGGGAGAAGAGCTTTCAAGTTTGACTGTAAAAGAATTACAGGGTTTGGAAAGCCAAATGGAAATTAGCCTTCGGAGTGTCCGTATGAAAAAGGACCAACTTTTAATGAATGAAATACAGGAACGAAACCTAAAGGGTAGCCTTATACACCAAGAAAATGTGGAGCTTTATAAGAAGGTCTATGAAACAAGATATGGGAACACAACAAAAAGAAATTCTGTTCTTACGAATGGTCTGGACATAGGAGAGGACTTGCAGGTTCCTGTAAATCTCCAACTCAGCCAGCCAGAGAAATAA 831 0.4356 MRIRTSTRQWQIRRLAPLSKAIKYTIALRESKPDWTTSLSLNADVNSIHSSVRLRKYSRHSPLGFTGMGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTDKLYDFASTSMKSVIDRYSKTKEDQHPHLGSSTSEVKFWQREAAMLRQHLQNLQENHRQMTGEELSSLTVKELQGLESQMEISLRSVRMKKDQLLMNEIQERNLKGSLIHQENVELYKKVYETRYGNTTKRNSVLTNGLDIGEDLQVPVNLQLSQPEK 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0454 276 SUPERFAMILY SRF-like 69 143 IPR036879 GO:0003677|GO:0046983
Lele02g0454 276 Coils Coil 154 181 - -
Lele02g0454 276 SMART madsneu2 68 127 IPR002100 GO:0003677|GO:0046983
Lele02g0454 276 PRINTS MADS domain signature 70 90 IPR002100 GO:0003677|GO:0046983
Lele02g0454 276 PRINTS MADS domain signature 90 105 IPR002100 GO:0003677|GO:0046983
Lele02g0454 276 PRINTS MADS domain signature 105 126 IPR002100 GO:0003677|GO:0046983
Lele02g0454 276 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 77 124 IPR002100 GO:0003677|GO:0046983
Lele02g0454 276 ProSiteProfiles MADS-box domain profile. 68 128 IPR002100 GO:0003677|GO:0046983
Lele02g0454 276 ProSitePatterns MADS-box domain signature. 70 124 IPR002100 GO:0003677|GO:0046983
Lele02g0454 276 Pfam K-box region 150 238 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele02g0454 276 ProSiteProfiles K-box domain profile. 154 244 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele02g0454 276 PANTHER SERUM RESPONSE FACTOR HOMOLOG 70 232 - -
Lele02g0454 276 Gene3D - 80 158 IPR036879 GO:0003677|GO:0046983
Lele02g0454 276 CDD MADS_MEF2_like 69 144 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0454 Lele-ChrLele02 2710861 2722885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0454 68 275 MADS-box Gene Family AT4G37940 62.981 4.77e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele02g0454 K-box 3.2e-25 No_clan