Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0452 ATGTCGGCCCCAGGGGTCCGATGGCACCGTCAAGATCGTCATGTGGTGATGGATAATGGCATAGTCCAAGTTACCTTATCAAACCCAGAGGGAATTGTTACTGGGATTCGATATAATGGTGTTGACAATTTGCTTGAGGTCCTTAACAATGAGAATAATCGAGGGATAAAAGGAACATGTTTTAAAGTTATAGTTCAAAATGAGGATCAGGTGGAGCTTTCATTCACACGAACGTGGGATCCTTCTCTTGAGGGGAAGTTTGTTCCCTTAAATATTGATAAAAGATTTATATTGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATCTATGAGCACTTAGCTGGATGGCCAGATTTTGATATTGGTGAAACGAGGATTACTTTCAAGCTAAGAAAAGACAAGTTTAATTACATGGCTGTAGAAGACAATAGGCAAAGGATTATGCCCCTTCCAGATGATCGGTTACCGGGAAGATGCCAGCCCTTGGCCTACCCAGAAGCTGTCCTGCTAGTCAATCCCAAAAATCCGCAACTCAAAGGCGAGGTGGATGACAAGTATCAATATTCATGTATTAACATGAATAATAAAGTCCATGGCTGGGTATCTTTCAACCCACCAGTCGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTTAAGCAGAATTTGACCTCACATGTTGGCCCTACCACACTTGCTATGTTTCTTAGTTCACACTATGCTGGACAAGATTTAGATCCCAAATTTAGAGGTGGTGAACCGTGGAAGAAGGTTTTCGGTCCGGTCTTTATTTATCTTAATTCTGGACCAGTCGGTGATGACCCACGTTGGCTGTGGGAGGATGCAAAAATACAGATGACGACCGAAGTCCAAAATTGGCCATATTCTTTCCCAGCTTCAGAGGATTTCTTGAAGTCAGATCAACGGGGTACCGTTAGTGGTAGGCTACTTGTGTTAGACAGGTGCATCTGCACAGATTTGATGCCAGCCGATGCTGCTTATGTTGGCCTTGCCCCACCTGGAGAGGCAGGGTCATGGCAAAGAGAATGCAAGGATTATCAATTCTGGACCAGAGCAGATGAGTATGGATTTTTTACAATTAAGAATGTACGTCCAGGGTACTACAACCTTTATGCTTGGGTCCCTGGTTTTATCGGAGACTACAGATTTAATGATCTGATGAAGATAGATTCAGGTTCTTACATCGAATTGGGTGAGATTGTGTATGAGCCCCCGAGGGATGGACCCACGTTGTGGGAAATAGGCATTCCCGATAGATCTGCCGCAGAATTTTACATTCCTGATCCAAGTCCGAATCTCGTTAATAGGCTTTTTGTCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGGTATACAGAACTGTATCCTGATGCTGATTTGATTTACACAGTTGGTGCTAGTAATTATTCCAGAAACTGGTTTTTCGCTCAGGTTCCCAGAAAGAAAGAGGATAACACTCTTCAAGGAACAACTTGGCAAATTAAGTTTGAACTCAGTAATGTTGCGCAGGGAAGTACGTATAAACTCAGAGTTGCAATTGCATCCGCAACATTAGCCGAAATGCAGATTCGAATAAATGATCCAAATGCAAAGCGGCCCCTATTTACCACTGGATTAATAGGAAGGGACAACTCAATTGCTAGACATGGAATTCATGGGCTCTATCGGCTGTACCATGTGGACGTACCTGGTGCTGCTCTTGTCTATGGCTTAAACACTATATTTTTAACGCAACCAAGATGTAACACCCCTTTTCAGGGACCACTCCTAGTTGCTTTGCTTAAGGCATACGTTCATGTCATGAATTATGGCGAATACAGTTTTCTTGGATCTGAAGAGAAAGTCAATTCCCAGCAGTTCTGTTACCAATCCAATAAACAAGGGGAAACCAAAACAACCTTTCATCTTTCACTCCGTGAAAGTACCGCCATGGCGCTAACAGGAGTGCAACTTCTGGTTGAAGAAACTCATGTGGTGATTGACAATGGAATATTAAAGGTGACCTTGTCAAATCCTGAGGGAATAGTAACAGGAATAGAATATAATGGCATCGACAACTTGCTTGAATATCAGAACGAAGAATCTAATAGAGGGTACTGGGATCTTGTGTGGAGCTCACCGACAAGTCCCGGAATATTTGACGTGATAAGGGGAAGCAATTTCAATGTGATAGTGGAAAATGAGGAACAAGTTGAGTTATCCTTCACAAGAACGTGGGATGCTTCACTTGAAGGCACGCTGGTTCCCTTAAACATCGATAAAAGGTTCATAATGTGTCGTGGTAGTTCTGGGTTCTATTCCTATGCTATATACGAACACTTAGATGAGTGGCCCGCTTTCAATCTCGACGAAACCAGAATTGCTTTCAAGCTCAGCAGAGAAAAGTTTCATTACATGGCAATGGCAGATAATAGACAAAGGAACATGCCTCTTCCAGGTGACCGAATCCCACCTAGAGGCCAACCCCTTGCTTATCCTGAGGCTGTTCTTCTTGTTAATCCTATCGAGCCTGAATTGAAAGGAGAGGTGGACGACAAGTACCAATATTCATGTGACAACAAAGATAGCAAGGTGCATGGATGGATTTGCACTGAGCCGGTGGTTGGATTCTGGCTAATAACGCCCAGCAACGAATTCCGATCCGGTGGACCCCTCAAACAGAACCTCACTTCTCATGTGGGACCCACCACTCTTGCTGTGTTTCTAAGTGCTCACTATAGTGGAGAAGATCTGGTGCCAAAATTCAAAGCTGGCGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATCTATTTGAATTCTTCCGATAATGGCGACAACCTATATAATACGCTATGGGAAGACGCTAAACTTCAGATGCAGATAGAAGTTCAAAGCTGGCCCTACAATTTTCCTGCCTCACAAGATTACCTAAAGTGGGACGAACGTGGCAATGTCAATGGGAGGCTACTCGTCCGAGACAGGTATATTAGAGATGTCGATATCTCAGCAAAAGGAGCTTATGTTGGCTTGGCTCCACCAGGAGACGCTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCCAAAGCAGACGATGATGGATATTTCTCCATCGGCAATATACGCCCTGGTGACTATAATCTTTACGCATGGGTCCCTGGTTTTATTGGTGATTATAGATATGATGTGGTTATGAACATAACTCCAGGCTGTGACATAGTAGTAGGTGATCTTGTGTATGAACCTCCAAGAGATGGTCCAACATTGTGGGAAATAGGCATCCCTGATCGTACAGCTGCTGAGTTTTATGTTCCTGATCCCAATCCCAAATATGTCAACAAGCTCTATGTTAATCATCCTGACAAGTTTAGGCAGTACGGGTTATGGGAGAGATATGCAGAGTTATACCCTGACAAAGACTTGATTTACACAGTTGGTGTTAGCGACTATACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATTCATATCAAGGAACCACATGGCAAATCAAGTTTAAACTGGACAAAGTGAACAAGAGAAGTGCCTATAAACTGCGCATTGCTCTAGCATCAGCAACATTTTCTGAACTACAGGTTCGAGTTAATGATCCAAAAGCAGCTCGTCCTGTGTTTTCAAGTGGGTTGATAGGGAGGGATAACTCCATTGCTAGGCATGGCATTCATGGGCTCTATTGGCTTTTCACTGTCGACATATGGGGTCCTCGACTAGTTGAAGGAGATAATACCATCTTTTTGACTCAGTCAAGAGGCAATGGCCCATTTCAAGCCATCCTGTATGATTATATTCGTTTAGAAGGCCCTCCCTCCTCTACTTCCAGCGATTTACGATTATGA 3906 0.4352 MSAPGVRWHRQDRHVVMDNGIVQVTLSNPEGIVTGIRYNGVDNLLEVLNNENNRGIKGTCFKVIVQNEDQVELSFTRTWDPSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLAGWPDFDIGETRITFKLRKDKFNYMAVEDNRQRIMPLPDDRLPGRCQPLAYPEAVLLVNPKNPQLKGEVDDKYQYSCINMNNKVHGWVSFNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLDPKFRGGEPWKKVFGPVFIYLNSGPVGDDPRWLWEDAKIQMTTEVQNWPYSFPASEDFLKSDQRGTVSGRLLVLDRCICTDLMPADAAYVGLAPPGEAGSWQRECKDYQFWTRADEYGFFTIKNVRPGYYNLYAWVPGFIGDYRFNDLMKIDSGSYIELGEIVYEPPRDGPTLWEIGIPDRSAAEFYIPDPSPNLVNRLFVNHPDRFRQYGLWDRYTELYPDADLIYTVGASNYSRNWFFAQVPRKKEDNTLQGTTWQIKFELSNVAQGSTYKLRVAIASATLAEMQIRINDPNAKRPLFTTGLIGRDNSIARHGIHGLYRLYHVDVPGAALVYGLNTIFLTQPRCNTPFQGPLLVALLKAYVHVMNYGEYSFLGSEEKVNSQQFCYQSNKQGETKTTFHLSLRESTAMALTGVQLLVEETHVVIDNGILKVTLSNPEGIVTGIEYNGIDNLLEYQNEESNRGYWDLVWSSPTSPGIFDVIRGSNFNVIVENEEQVELSFTRTWDASLEGTLVPLNIDKRFIMCRGSSGFYSYAIYEHLDEWPAFNLDETRIAFKLSREKFHYMAMADNRQRNMPLPGDRIPPRGQPLAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSKVHGWICTEPVVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYLNSSDNGDNLYNTLWEDAKLQMQIEVQSWPYNFPASQDYLKWDERGNVNGRLLVRDRYIRDVDISAKGAYVGLAPPGDAGSWQRECKNYQFWAKADDDGYFSIGNIRPGDYNLYAWVPGFIGDYRYDVVMNITPGCDIVVGDLVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYVNKLYVNHPDKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNSYQGTTWQIKFKLDKVNKRSAYKLRIALASATFSELQVRVNDPKAARPVFSSGLIGRDNSIARHGIHGLYWLFTVDIWGPRLVEGDNTIFLTQSRGNGPFQAILYDYIRLEGPPSSTSSDLRL 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0452 1301 Gene3D - 990 1078 - -
Lele02g0452 1301 Gene3D - 311 396 - -
Lele02g0452 1301 Pfam Polysaccharide lyase family 4, domain III 1100 1288 IPR029411 -
Lele02g0452 1301 Pfam Polysaccharide lyase family 4, domain III 423 603 IPR029411 -
Lele02g0452 1301 CDD RGL4_N 6 275 - -
Lele02g0452 1301 CDD RGL4_C 425 603 - -
Lele02g0452 1301 Pfam Polysaccharide lyase family 4, domain II 1014 1085 IPR029413 -
Lele02g0452 1301 Pfam Polysaccharide lyase family 4, domain II 337 409 IPR029413 -
Lele02g0452 1301 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 667 1292 - -
Lele02g0452 1301 CDD RGL4_M 991 1090 IPR029413 -
Lele02g0452 1301 CDD RGL4_C 1102 1289 - -
Lele02g0452 1301 SUPERFAMILY Galactose-binding domain-like 420 603 IPR008979 -
Lele02g0452 1301 SUPERFAMILY Starch-binding domain-like 312 394 IPR013784 GO:0030246
Lele02g0452 1301 Pfam Rhamnogalacturonate lyase family 11 183 IPR010325 -
Lele02g0452 1301 Pfam Rhamnogalacturonate lyase family 665 859 IPR010325 -
Lele02g0452 1301 CDD RGL4_N 672 957 - -
Lele02g0452 1301 SUPERFAMILY Galactose mutarotase-like 12 279 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele02g0452 1301 CDD RGL4_M 314 413 IPR029413 -
Lele02g0452 1301 Gene3D - 421 603 - -
Lele02g0452 1301 Gene3D - 1098 1289 - -
Lele02g0452 1301 SUPERFAMILY Galactose mutarotase-like 671 964 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele02g0452 1301 SUPERFAMILY Galactose-binding domain-like 1097 1289 IPR008979 -
Lele02g0452 1301 FunFam Rhamnogalacturonate lyase B 988 1087 - -
Lele02g0452 1301 FunFam Rhamnogalacturonate lyase B 311 410 - -
Lele02g0452 1301 SUPERFAMILY Starch-binding domain-like 1015 1076 IPR013784 GO:0030246
Lele02g0452 1301 Gene3D - 6 288 IPR014718 GO:0030246
Lele02g0452 1301 Gene3D - 665 970 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0452 Lele-ChrLele02 2688188 2697677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0452 1 605 Polysaccharide Lyase AT1G09890 65.545 0.0 853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0452 02 2688188 2697677 Lele02g0452 02 2688188 2697677 ECH
Lele02g0452 02 2688188 2697677 Lele03g0476 03 2739786 2743767 hybridization
Lele02g0452 02 2688188 2697677 Lele04g0469 04 2807104 2810925 hybridization