Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0446 ATGTACGGACAACTCCCATCAGTGAATGTCACCAATCGGATCAGCACCGGAGAAGATGAAGATGGCGCTGGCATTGGCGCCGAATCAATTGACAATCGCAACATCCATTACGAAACGCAAGCCGTCGAAGATGGCAGTGGTGGAGTCGGGGGCGTAGTGGAGGACGTGAACTCCGATACCATATACGTTTCCGGCAGTGGTTCTGAATTATCCATCCCGCACGAGGATCCTAGCCAACTTACGTTGTCATTTCGTGGCCAAGTATATGTTTTTGACTCTGTTACCCCTGATAAGGTGCAAGCGGTATTATTACTGTTGGGTGGATCTGAAATACCACCGGGTTCGCAATGTGAGGATATAGCCCCTCAAAATGAGAGAGGTGCGATGGATTACCCTGGAAGATGTAGTCAGCCACACCGAGCAGCCTCCTTAAGCAGGTTTCGTCAGAAGAGAAAAGAGCGCTGCTTTGATAAGAAAGTTAGATATAGCGTGCGTCAAGAAGTCGCTCTCAGGATGCACCGTAATAAGGGTCAATTTACTTCTTCTAAGAAGCAAGATGGAGCTAATAGTTTGGGAACAGTCCAAGAGTCAGGGCAGGATGACAATCAATCAGAAACCTCGTGCTCACATTGTGGCACTAGTTCAAAATCCACCCCAATGATGAGGCGTGGGCCATCAGGACCAAGGTCATTGTGCAATGCTTGTGGACTTTTTTGGGCACATAGGGGTACTTTGAGGGACTTATCCAAGAAGAACCACGAACATTCTCTTGCACCCGTTGAGCAGGTTGAACGGGATGATTTACATTCTCGGACTGCTAACCTTGCATGTAACAATCTTGGGGCTTTCCCTGATAATGTTCGTGACCTGTGGGGTTTTGGAGGGAAATTGATGGCAGCCGTGAATCCTCAACCTCTGCAGGCGCGTACGTTCGAGAAACACGTGCGGGGCCCAGTAGCGATAGAGGACGACGACGGTGACAATGAGGATGGGGGTGCTAGTGGCGATGCCATGGATGACTGGGAAGAGGGAAATGTTAATTCAGTGACTGTGCCAAACCATGGAGTAGTTGTTACGACGTCCCGAACTAGTGAGCTCACTCTTTCTTTCGAGGGGGAAGTTTATGTGTTTCCTGCGGTGACACCGGAGAAGGTGCAAGCTGTTTTGCTGCTTTTAGGAGGACGTGATGTGCCTGCATGTGCTCCTTCTGTTGAAGTACCATTTGATGAAAGCAGCAAGGGCATAGATGATACTCCAAAGCAGCTGAACCTTTCAAGAAGAATAGCCTCCTTGGTTAGGTTCCGTGAAAAACGCAAGGAAAGATGTTTCGACAAGAAGATTAGGTACTCTGTGAGAAAAGAGGTGGCTCAAAGGATGCATCGCAAGAATGGACAATTTGCATCCTTCAAAGAAAGTCCTGGTTCATCTAGTTTGGATCATTCTACAGAAATCTTTCATCAGGATGGCGCTCATTCTGGAACTTTACGTAGATGTCAACATTGTGGTGTTAGTGAAAATAATACTCCTGCCATGCGTCGTGGCCCAGCTGGACCAAGGACTCTATGTAATGCATGTGGCCTTATGTGGGCAAATAAGGGAACACTCAGAGATCTCAGCAAGGGAGGAAGAAATCTTTCTGTTGAGCAAAGTGAGCTGGAGACTCCTCTTGAGGTCAAACCAATTATCCTGGAAGGAGAATTGCTTGGCGTCCATGACAACCAAGGAATTTCTGAAGACCCTTCCAAGGCCATTGCTGAAGGATCTAACAATCATGCTGTCAACCCCAGTGATGAGGAATTGCGGTCTGGTGAACGCTTATCCAATGCACTGTCAGCAGGCTTTGTGCATTCTTCAGCAAATGATGATGGGCAGGAACCTCTGGCTGAGCTTTCCTATCCTTCCGAGACAGATATTGACATTCCCGGAAACTTTGATTAG 1938 0.4783 MYGQLPSVNVTNRISTGEDEDGAGIGAESIDNRNIHYETQAVEDGSGGVGGVVEDVNSDTIYVSGSGSELSIPHEDPSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGSEIPPGSQCEDIAPQNERGAMDYPGRCSQPHRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSLGTVQESGQDDNQSETSCSHCGTSSKSTPMMRRGPSGPRSLCNACGLFWAHRGTLRDLSKKNHEHSLAPVEQVERDDLHSRTANLACNNLGAFPDNVRDLWGFGGKLMAAVNPQPLQARTFEKHVRGPVAIEDDDGDNEDGGASGDAMDDWEEGNVNSVTVPNHGVVVTTSRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPACAPSVEVPFDESSKGIDDTPKQLNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASFKESPGSSSLDHSTEIFHQDGAHSGTLRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSELETPLEVKPIILEGELLGVHDNQGISEDPSKAIAEGSNNHAVNPSDEELRSGERLSNALSAGFVHSSANDDGQEPLAELSYPSETDIDIPGNFD 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0446 645 Gene3D - 493 545 IPR013088 GO:0006355|GO:0008270
Lele02g0446 645 SMART tify_2 359 394 IPR010399 -
Lele02g0446 645 SMART tify_2 73 108 IPR010399 -
Lele02g0446 645 ProSiteProfiles GATA-type zinc finger domain profile. 202 251 IPR000679 GO:0006355|GO:0043565
Lele02g0446 645 MobiDBLite consensus disorder prediction 181 221 - -
Lele02g0446 645 CDD ZnF_GATA 497 541 IPR000679 GO:0006355|GO:0043565
Lele02g0446 645 MobiDBLite consensus disorder prediction 572 645 - -
Lele02g0446 645 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 493 542 - -
Lele02g0446 645 SMART GATA_3 492 545 IPR000679 GO:0006355|GO:0043565
Lele02g0446 645 SMART GATA_3 202 255 IPR000679 GO:0006355|GO:0043565
Lele02g0446 645 PANTHER GATA TRANSCRIPTION FACTOR 28 300 638 IPR045280 GO:0006355
Lele02g0446 645 MobiDBLite consensus disorder prediction 173 226 - -
Lele02g0446 645 ProSitePatterns GATA-type zinc finger domain. 208 235 IPR000679 GO:0006355|GO:0043565
Lele02g0446 645 Pfam tify domain 76 107 IPR010399 -
Lele02g0446 645 Pfam tify domain 362 393 IPR010399 -
Lele02g0446 645 ProSiteProfiles Tify domain profile. 359 394 IPR010399 -
Lele02g0446 645 ProSiteProfiles GATA-type zinc finger domain profile. 492 551 IPR000679 GO:0006355|GO:0043565
Lele02g0446 645 Gene3D - 198 258 IPR013088 GO:0006355|GO:0008270
Lele02g0446 645 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 204 258 - -
Lele02g0446 645 MobiDBLite consensus disorder prediction 1 16 - -
Lele02g0446 645 Pfam GATA zinc finger 498 534 IPR000679 GO:0006355|GO:0043565
Lele02g0446 645 Pfam GATA zinc finger 208 244 IPR000679 GO:0006355|GO:0043565
Lele02g0446 645 ProSitePatterns GATA-type zinc finger domain. 498 525 IPR000679 GO:0006355|GO:0043565
Lele02g0446 645 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Lele02g0446 645 MobiDBLite consensus disorder prediction 1 31 - -
Lele02g0446 645 CDD ZnF_GATA 207 252 IPR000679 GO:0006355|GO:0043565
Lele02g0446 645 Pfam CCT motif 140 182 IPR010402 GO:0005515
Lele02g0446 645 Pfam CCT motif 427 468 IPR010402 GO:0005515
Lele02g0446 645 ProSiteProfiles CCT domain profile. 427 469 IPR010402 GO:0005515
Lele02g0446 645 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0446 Lele-ChrLele02 2594960 2605785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0446 365 540 Tify Gene Family AT4G24470 52.514 3.01e-49 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele02g0446 CCT 5.6e-13 CL0281