Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0421 ATGTGGGTAGCATGTAGAAAGGAAATTAGAAGGAGAAGACAAGACAAGGAGAAGCGAATAAAAAGGGGATGGGAATGGGGAGAAGATGAAAGGATAGAGGGAAGGGGAAGGATGAGTGACAACTGTGATATGAAAGAGAGACAAAATCCTGAGGCGTATGGGTGTTCTTATACTTCACTTAATTATTCTGTAACCCTTGATTGCGTGGATGTTGATAGTATGGAACAAGATAGGAAGGTGGTAGTTAATAAGAGGAGGGAGAAGGGAATGGAGATGGATGAAGATGAGGAAGCAGGGATTATGGAATTTGAGGAGCAAGATCGGGAGCACGAAGAGGCAGAGGAAGAAATGGGGATCTCCGTGCCCCCGACGAGTTTCGACTCGCCTCTCTCCAAAACAGGTGCTGCCTTCGGAACCCAGGGAGGTGCATCCGCCATGACCGGGGTCAGGAAAGGCGGTCCAACAGGAACTGTCAGGTACAGAGAGTGTCTGAAGAATCACGCCTTCAGCATCGGCGGCCACGCCGTCGACGGTTGCGGGGAGTTTCTAGCGGCGGGTCAGGAAGGCACGCTCGACGCTCTCAAATGCGCCGCCTGCAACTGTCATCGCAACTTCCACCGCAAGGAGATCGAGGGAGAAACTAGCTCTTTTCACCTGCCGCAGCCGCACCACCCCCAGTACCCCCATCAATTTCCCCCTTACTACCGTGGGCCGCCGCCGCCAGGAACAGGATACCTCCACCACCACCTGACAAATCCCGCCATGGCACATCACCGGCATCTGGCTCTACCAGCAGCGGCATCCGGCGGAGGACTGAGTAGAGAAGAGGAAGACATGTCCAATCCGAGTAGCAGCGGAGGCGGAGGTTTTGGCGGTGGAGGGAGCGGTGGGGAAAGGAAGAAACGGTTTCGAACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGCATTTTCGGAAAAGGTGGGGTGGAGAATCCAGAAGCATGACGAAGCAGCGGTGGAGCAATTATGTGTAGAGACTGGCGTCAAGAGGCAGGATTCTGATGAAGTGATTTCCGATATGATATGTGCGCACCGCACTGCAAGCTTCATAAGAGCCATCTGGTTGAGAATAACAGGAAGTGTAATTAATAGCAAAATTTCAGGGAAGAAGGACAAAAAGGAGTAA 1170 0.5239 MWVACRKEIRRRRQDKEKRIKRGWEWGEDERIEGRGRMSDNCDMKERQNPEAYGCSYTSLNYSVTLDCVDVDSMEQDRKVVVNKRREKGMEMDEDEEAGIMEFEEQDREHEEAEEEMGISVPPTSFDSPLSKTGAAFGTQGGASAMTGVRKGGPTGTVRYRECLKNHAFSIGGHAVDGCGEFLAAGQEGTLDALKCAACNCHRNFHRKEIEGETSSFHLPQPHHPQYPHQFPPYYRGPPPPGTGYLHHHLTNPAMAHHRHLALPAAASGGGLSREEEDMSNPSSSGGGGFGGGGSGGERKKRFRTKFTQEQKEKMLAFSEKVGWRIQKHDEAAVEQLCVETGVKRQDSDEVISDMICAHRTASFIRAIWLRITGSVINSKISGKKDKKE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0421 389 MobiDBLite consensus disorder prediction 225 240 - -
Lele02g0421 389 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 300 346 IPR006455 -
Lele02g0421 389 Pfam ZF-HD protein dimerisation region 158 210 IPR006456 -
Lele02g0421 389 MobiDBLite consensus disorder prediction 269 300 - -
Lele02g0421 389 SUPERFAMILY Homeodomain-like 286 345 IPR009057 -
Lele02g0421 389 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 160 209 IPR006456 -
Lele02g0421 389 Gene3D - 289 347 - -
Lele02g0421 389 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 136 346 - -
Lele02g0421 389 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 159 210 IPR006456 -
Lele02g0421 389 MobiDBLite consensus disorder prediction 215 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0421 Lele-ChrLele02 2430512 2434647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0421 101 346 ZF-HD Transcription Factor Family AT4G24660 48.387 1.11e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele02g0421 ZF-HD_dimer 1.7e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0421 02 2430512 2434647 Lele02g0421 02 2430512 2434647 ECH
Lele02g0421 02 2430512 2434647 Lele03g0437 03 2485318 2486844 hybridization
Lele02g0421 02 2430512 2434647 Lele04g0429 04 2532293 2535917 hybridization