LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele02g0410	ATGGCGCTATTTCGTATCTCCGGCCTGCCGTCAACAGCTAACCTCTCCGCAGAACACCAACTTCGACCGCTCTCTTCCCTCCATAATTTTCCCCATCCTTCCATCGGCAATCTCTTGTTTTGTCGCTCGCCTTCCTGGTTTAATTTTCTACGTCGATCCCTTGCGCATCCCTCAGACTATACAACCAAGGAAATTTCTCATTCTCTACCAATATTTGCCACTACATCCCAAGAACAAGCGCTTACTTCCTCTCCTTCAGATGTTACCGATGACGGCCAACCAACCGAGGCACAAGCTGAAGAATTTTCTCGAATCAGATTGCTTGCTGAGAACCTACCTTGGACTTCCACTCCTGAAGACGTTCGTTCTTTGTTCGAGAGGCATGGTAGAGTCCTAGACGTTGAGTTATCGATGTATAATAAGACTAGAAACAGGGGTTTGGCGTTCGTTGAAATGGGTTCGGAAGAAGAGGCTCTTGCAGCTTTGAATAGTCTGGAATCACTTGTTAACGGGAATGCACTGGACCTAATAATTTCGTGTTCCTTTGTGTTAGAGGTAGGATTAGGCTCTGAGTTATTAACTCTTGAGGAGGGTCCTCGTATGAGGAAAATAGATTATCTGTATTCATGCAGGCGATTGGAATATGAAGGGCGTACACTGAGACTCGCATATGCTAGGCCGAAAAAGAAGAAAGATCCACCTCCTGTGCAGCAGAATACAGTAACATTTAACATATTTGTTGCAAATTTGTCCTATGAAGCGAGGGCTAAAGATCTCAAGGAGTTTTTTGATTCAGGAAGCGGTAGTGTTGTTTCTGCCGAGGTCATATTTCATGACAACCCTAGAAAGTCTGCTGGTTATGGATTTGTATCATTCAAGTCTAAGAAAGAAGCTGAGGCTGCCCTTACTGAGTTTCAAGGGAAGGATGTGGGTAAATTGCCTGTTCTGCAGATTTTTATGGGAAGGCCAATCAGGGTGGCACGTAGTAAGCAGTTTGTTAAACGACGGGTAGAGGAGAGTGCAAGGTCTGAAGATACATCTTCCCAGACCAGCGTGAATGGGGTAGAAGAAGATGAAGCTGAATGA	1086	0.4503	MALFRISGLPSTANLSAEHQLRPLSSLHNFPHPSIGNLLFCRSPSWFNFLRRSLAHPSDYTTKEISHSLPIFATTSQEQALTSSPSDVTDDGQPTEAQAEEFSRIRLLAENLPWTSTPEDVRSLFERHGRVLDVELSMYNKTRNRGLAFVEMGSEEEALAALNSLESLVNGNALDLIISCSFVLEVGLGSELLTLEEGPRMRKIDYLYSCRRLEYEGRTLRLAYARPKKKKDPPPVQQNTVTFNIFVANLSYEARAKDLKEFFDSGSGSVVSAEVIFHDNPRKSAGYGFVSFKSKKEAEAALTEFQGKDVGKLPVLQIFMGRPIRVARSKQFVKRRVEESARSEDTSSQTSVNGVEEDEAE	361

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele02g0410	361	Gene3D	-	231	359	IPR012677	-
	Lele02g0410	361	MobiDBLite	consensus disorder prediction	336	361	-	-
	Lele02g0410	361	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	245	312	IPR000504	GO:0003723
	Lele02g0410	361	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	110	166	IPR000504	GO:0003723
	Lele02g0410	361	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	105	227	IPR000504	GO:0003723
	Lele02g0410	361	CDD	RRM_SF	111	174	-	-
	Lele02g0410	361	SUPERFAMILY	RNA-binding domain, RBD	234	336	IPR035979	GO:0003676
	Lele02g0410	361	Coils	Coil	359	361	-	-
	Lele02g0410	361	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	243	331	IPR000504	GO:0003723
	Lele02g0410	361	SUPERFAMILY	RNA-binding domain, RBD	90	167	IPR035979	GO:0003676
	Lele02g0410	361	SMART	rrm1_1	244	317	IPR000504	GO:0003723
	Lele02g0410	361	SMART	rrm1_1	106	177	IPR000504	GO:0003723
	Lele02g0410	361	PANTHER	OS02G0815200 PROTEIN	60	329	-	-
	Lele02g0410	361	Gene3D	-	72	230	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele02g0410	Lele-ChrLele02	2383300	2384995	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele02g0410	107	334	Eukaryotic Initiation Factors Gene Family	AT3G16380	27.511	5.23e-09	55.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele02g0410	02	2383300	2384995	Lele25g0383	25	2331439	2333437	CCT
	Lele02g0410	02	2383300	2384995	Lele26g0399	26	2407595	2409186	CCT
	Lele02g0410	02	2383300	2384995	Lele27g1700	27	22378399	22380431	CCT
	Lele02g0410	02	2383300	2384995	Lele28g0393	28	2413806	2415460	CCT
	Lele02g0410	02	2383300	2384995	Lele02g0410	02	2383300	2384995	ECH
	Lele02g0410	02	2383300	2384995	Lele03g0426	03	2425560	2427258	hybridization
	Lele02g0410	02	2383300	2384995	Lele04g0418	04	2478490	2480719	hybridization