Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0394 ATGGCTTACCCGCATTACCGATCACAGTTCGGCGACACCACGTTCACCAAAGTGTTTGTCGGAGGACTCGCTTGGGAGACTCCCACTGAAGAAATGCGTAAATATTTCGAGCAATTCGGAGACATTCTCGAGGCTGTTGTAATCACCGATAAGAATACAGGAAAATCTAAAGGCTATGGATTCGTCACATTCCGTGATCCAGAATCAGCCAGAAGGGCTTGTGCTGATCCAAACCCAATAATAGACGGAAGAAGAGCCAACTGTAATATTGCTTCTCTGGGACGACCTCGACCTTCCCCACCCCGAGGGAGGAATACATTTCAAGGCGGGAGCACGTCACAGAGTGCAGCATCATATGGTGGAGCTCCGGCAGCAGCTCCGCCGGCGCCTCCTCCTCCGCCCCCTCCGGCGGGGGCGGGGGCTGGGCTGATGTACCCGGCATATGGCTACTCTCCCTACTCTCCTGATTACGGATACCACCAATCGGCAATGTACAACCCCCAGATTCAGCAGCCACAATACTACCAGCAAGTGTATGGAGCTTCATCGTCGGGCGTGAGCCCCCCATATTACTATGGCGGGTATCCTGTGCAGCCGCCACCCAGGGCCTCTTATTCTACGCCCCAACCTCATCGCCTGCCACCTGGGCCCCCATATCTGTACTACCCTTACCCTCCTTCGCCCTCAGCCCCACCCCCGCCCCCGCCCCCCGATCTCTCCTTCTCCGCTTATCGTCCCCCTCGACAACCGACACTGTTAAGGCAGCCCTTCGTCCCTTCCTCTCCTGATTCGCAGTCACAGGCTCAGCAGCGTACCTCCTCCGAGACCGCGGCTGCGGCTTCATCGGACAGTCCGAGTACTCGAGGAAAAAACTAA 876 0.5674 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVVITDKNTGKSKGYGFVTFRDPESARRACADPNPIIDGRRANCNIASLGRPRPSPPRGRNTFQGGSTSQSAASYGGAPAAAPPAPPPPPPPAGAGAGLMYPAYGYSPYSPDYGYHQSAMYNPQIQQPQYYQQVYGASSSGVSPPYYYGGYPVQPPPRASYSTPQPHRLPPGPPYLYYPYPPSPSAPPPPPPPDLSFSAYRPPRQPTLLRQPFVPSSPDSQSQAQQRTSSETAAAASSDSPSTRGKN 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0394 291 MobiDBLite consensus disorder prediction 201 291 - -
Lele02g0394 291 CDD RRM_RBM24_RBM38_like 16 91 - -
Lele02g0394 291 SUPERFAMILY RNA-binding domain, RBD 9 116 IPR035979 GO:0003676
Lele02g0394 291 MobiDBLite consensus disorder prediction 254 291 - -
Lele02g0394 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Lele02g0394 291 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lele02g0394 291 MobiDBLite consensus disorder prediction 90 137 - -
Lele02g0394 291 MobiDBLite consensus disorder prediction 201 243 - -
Lele02g0394 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Lele02g0394 291 Gene3D - 3 111 IPR012677 -
Lele02g0394 291 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Lele02g0394 291 PANTHER BOULE-RELATED 6 274 IPR037366 -
Lele02g0394 291 MobiDBLite consensus disorder prediction 104 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0394 Lele-ChrLele02 2310522 2313509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0394 12 92 C2H2 Transcription Factor Family AT2G19380 40.741 2.89e-15 73.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0342 25 2089314 2094486 Lele02g0394 02 2310522 2313509 CCT
Lele02g0394 02 2310522 2313509 Lele02g0394 02 2310522 2313509 ECH
Lele02g0394 02 2310522 2313509 Lele03g0407 03 2340990 2343932 hybridization
Lele02g0394 02 2310522 2313509 Lele04g0402 04 2400238 2403376 hybridization