LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele02g0374	ATGAAGAACCAGAATCTGGTGGTTCCCGATGTAAAATCACGTCTTAACACCTTTATTGAGGTGGCCGTGTCCATTTCCCACTCGCCCATGATGCCCAGCACGGCGGTGCCAGAACCGCTGGTCGTGCTTGGTGGGATCTTCGGGAAGAAGATAATGAAGAGGCTTGACGATGGAGGAGGAAAAGGTGGAACCAGAGTCAATGCCTGGATTGATTCAATGAGAGCTTCCTCTCCCACACGCCTCAAATCCCCCCTCTCTGCTTCTCAAAACCAGCACTTGAGTTCTTGGACTCTTCATCATCCGTCGGCGATCAACATGTTTGATCAGATAATCAGTAACTCAAAAGATAAGCAAATAGTAATCTTCCTTGACTACGATGGAACTCTGTCCCCAATTGTTGCAGACCCTGATAAAGCATTCATGACTAACAAGATGAGAGCAACGGTGAAGGATATAGCAAAACACTTTCCCACGGCCATCGTGAGTGGAAGGCGGAGAGACAAGGTTTACAATTTTGTGAGATTAGCAGAGCTGTACTATGCGGGAAGCCATGGCATGGACATCAAAGGGCCGACAAAGAGCCAAGGATCTAAGAAAGGTAACCGAGCGGCCCCCTTCCAGCCTGCAAGCCAATTCTTGCCCATGATCAATGAGGTTTACAAGATCTTGTTGGAGAAAACAAAATCCGTGGAAGGGGCTAAGGTTGAGAATAACAAGTTTTGCTTGTCCGTACACTTCCGTTGCGTTGACGAGAAGAGCTGGGGGGCACTGGCGGAGCAAGTTCGGCTAGTGCTGAATCAGTACCCCAAACTTAAGCTGACGGAAGGCAGAAAAGTGCTTGAGATCCGACCAACCATCAAATGGGACAAGGGCAAAGCTCTTGAATTTTTGTTACATTCGCTCGGATTCGCCAATTCCAAGGATGTCTTCCCCATCTATATCGGCGATGACCGAACTGACGAGGATGCTTTTAAGGTGTTACGTAGGAGAGGCCAAGGCACCGGAATTCTCGTATCCCAAGTTCCCAAAGAAACGGAAGCTTCCTACACTTTACAAGACCCATCAGAGGTTGGGCAATTTTTGCGGCGTTTGGTAGAGTGGAAAAGGAGGAGTAATAATGAGAGTTGA	1128	0.4814	MKNQNLVVPDVKSRLNTFIEVAVSISHSPMMPSTAVPEPLVVLGGIFGKKIMKRLDDGGGKGGTRVNAWIDSMRASSPTRLKSPLSASQNQHLSSWTLHHPSAINMFDQIISNSKDKQIVIFLDYDGTLSPIVADPDKAFMTNKMRATVKDIAKHFPTAIVSGRRRDKVYNFVRLAELYYAGSHGMDIKGPTKSQGSKKGNRAAPFQPASQFLPMINEVYKILLEKTKSVEGAKVENNKFCLSVHFRCVDEKSWGALAEQVRLVLNQYPKLKLTEGRKVLEIRPTIKWDKGKALEFLLHSLGFANSKDVFPIYIGDDRTDEDAFKVLRRRGQGTGILVSQVPKETEASYTLQDPSEVGQFLRRLVEWKRRSNNES	375

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele02g0374	375	FunFam	Trehalose 6-phosphate phosphatase	215	374	-	-
	Lele02g0374	375	SUPERFAMILY	HAD-like	120	368	IPR036412	-
	Lele02g0374	375	FunFam	Trehalose 6-phosphate phosphatase	209	285	-	-
	Lele02g0374	375	PANTHER	TREHALOSE 6-PHOSPHATE PHOSPHATASE	59	373	IPR044651	GO:0004805\|GO:0005992
	Lele02g0374	375	CDD	HAD_TPP	120	358	-	-
	Lele02g0374	375	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	121	330	IPR006379	-
	Lele02g0374	375	FunFam	Trehalose 6-phosphate phosphatase	119	205	-	-
	Lele02g0374	375	Pfam	Trehalose-phosphatase	122	355	IPR003337	GO:0003824\|GO:0005992
	Lele02g0374	375	TIGRFAM	T6PP: trehalose-phosphatase	117	365	IPR003337	GO:0003824\|GO:0005992
	Lele02g0374	375	Gene3D	-	209	375	IPR023214	-
	Lele02g0374	375	Gene3D	-	119	203	IPR023214	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele02g0374	Lele-ChrLele02	2176993	2178982	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele02g0374	115	364	Trehalose Biosynthesis Gene Families	AT1G70290	26.866	5.54e-11	62.4

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele02g0374	02	2176993	2178982	Lele25g0346	25	2118382	2119446	CCT
	Lele02g0374	02	2176993	2178982	Lele26g0363	26	2192880	2193561	CCT
	Lele02g0374	02	2176993	2178982	Lele27g1735	27	22626956	22627645	CCT
	Lele02g0374	02	2176993	2178982	Lele28g0362	28	2215252	2216477	CCT
	Lele02g0374	02	2176993	2178982	Lele02g0374	02	2176993	2178982	ECH
	Lele02g0374	02	2176993	2178982	Lele03g0384	03	2225097	2227367	hybridization
	Lele02g0374	02	2176993	2178982	Lele04g0382	04	2274563	2276549	hybridization