Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0373 ATGTCTAATGGCGTAGCAGGTTATGATTTTTGGGTTTGTATTCAATCTGATGAAAAAGCAAACTTAAAGGATTTCTCGAAAGCCGGGTGTTTTCAGAATCGAGATCAGAGGGTTGTTTTTGATCCCTCAGAGCTCTGCTTTCGATTCTCAGGATTAGGGTTGCCTAACATGGACTCGTATAGTGTTCTGCAAATTCAGCCGGATCCCTTCAACGGTGAGTTAATGGAAGCACTCGAGCCTTTTATGAAGAGTGCCTCCTCAACATCCTTACCGTCTCCGTACTCGCTGTTATCCCCGGTTTCGAATCTATTCCTGCCTTCTCAACCTCCTCCTTCCAACTTCTTCCATTCCGCTCCTTCAGTCCCTCTTCAGCCCAATTTGTTTGCAGATGGTTGCTCGACATCGATAACCCATGTATTTGCCGACGGGTTATTCAACAGCCAAAACTTGATTGGTTTCGGGCAGCCAACTCCTCTTGGGTTCAACAACCAGACTCTGTCTCAGACTAACCAGATTCCACCTCAGATCCTTCCCCAGAATCCCCAAAACATGACCTGTCAACAAAATACCCTCAGCTTCTTGAGCCCCAAGCCTATTCCCATGAAGCAAATGGGTGTGCCTTCTAAGCCCACCAAGCTGTACAGAGGGGTCAGGCAGCGGCATTGGGGAAAATGGGTCGCCGAGATCCGACTTCCGAAGAACCGGACCCGCCTCTGGCTCGGCACCTTCGATACTGCCGAAGAAGCTGCCCTCGCCTACGACAAGGCCGCTTACAAGCTCAGAGGTGACTCCGCCAGGCTTAACTTCCCCAACCTCCGACACCGAGGTTCCTGTGTTGAGGGCGAATTCGGGGAGTTCAAGCCTCTACATTCCTCTCTGGATGCAAAGCTTGAAGCAATTTGCGAAAGCATGGCTGAGATGCAGAAACAGGGAAAGTTGGAGAGACCAAAGAGGTCTTCAGGGCGGTCTAAATCGGGTCCCAAGGCCACTCAGCCGCAGACTGTAACGCTGTCGGATGAGCAGCCGTTCCCTGGCGAAGCTGATTTGAGGGGAGCGGAGGACTCTGACAACAAGGTGGAGACTTCCTCTTCTCCGGTGATGACTGAGAGTGGGGAGTCTGGTGGTTCATCTCCTCTGTTGGATTTGACATTCGACGATGCCAATGAGCCTCAATGGGAAAGTATGGCGGAGATTTTTAATCTGCAGAAGTACCCTTCTGAGATCGACTGGGCATCATTGTGA 1242 0.5081 MSNGVAGYDFWVCIQSDEKANLKDFSKAGCFQNRDQRVVFDPSELCFRFSGLGLPNMDSYSVLQIQPDPFNGELMEALEPFMKSASSTSLPSPYSLLSPVSNLFLPSQPPPSNFFHSAPSVPLQPNLFADGCSTSITHVFADGLFNSQNLIGFGQPTPLGFNNQTLSQTNQIPPQILPQNPQNMTCQQNTLSFLSPKPIPMKQMGVPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDSARLNFPNLRHRGSCVEGEFGEFKPLHSSLDAKLEAICESMAEMQKQGKLERPKRSSGRSKSGPKATQPQTVTLSDEQPFPGEADLRGAEDSDNKVETSSSPVMTESGESGGSSPLLDLTFDDANEPQWESMAEIFNLQKYPSEIDWASL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0373 413 MobiDBLite consensus disorder prediction 323 340 - -
Lele02g0373 413 SUPERFAMILY DNA-binding domain 213 271 IPR016177 GO:0003677
Lele02g0373 413 MobiDBLite consensus disorder prediction 307 388 - -
Lele02g0373 413 MobiDBLite consensus disorder prediction 358 377 - -
Lele02g0373 413 PRINTS Ethylene responsive element binding protein signature 214 225 IPR001471 GO:0003700|GO:0006355
Lele02g0373 413 PRINTS Ethylene responsive element binding protein signature 236 252 IPR001471 GO:0003700|GO:0006355
Lele02g0373 413 CDD AP2 212 272 IPR001471 GO:0003700|GO:0006355
Lele02g0373 413 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 59 413 - -
Lele02g0373 413 ProSiteProfiles AP2/ERF domain profile. 213 270 IPR001471 GO:0003700|GO:0006355
Lele02g0373 413 Gene3D AP2/ERF domain 213 271 IPR036955 GO:0003700|GO:0006355
Lele02g0373 413 FunFam Ethylene-responsive transcription factor 2 212 271 - -
Lele02g0373 413 Pfam AP2 domain 214 262 IPR001471 GO:0003700|GO:0006355
Lele02g0373 413 SMART rav1_2 213 276 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0373 Lele-ChrLele02 2165962 2168222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0373 72 413 AP2-EREBP Transcription Factor Family AT1G78080 50.000 9.25e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele02g0373 AP2 1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0347 26 2090172 2090805 Lele02g0373 02 2165962 2168222 CCT
Lele27g1755 27 22736017 22739754 Lele02g0373 02 2165962 2168222 CCT
Lele28g0346 28 2105859 2108724 Lele02g0373 02 2165962 2168222 CCT
Lele02g0373 02 2165962 2168222 Lele02g0373 02 2165962 2168222 ECH
Lele02g0373 02 2165962 2168222 Lele03g0383 03 2215061 2216146 hybridization
Lele02g0373 02 2165962 2168222 Lele04g0380 04 2263366 2264442 hybridization