Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0341 ATGACCGGGGGCCGATGTCACCGGAGGAGGAAGATGAAGGGCAGAGGTGCGGAAGGAGGTTGCGGAACCGAGGACATGCCTTGCTCGGTTTCGAGGGTTCCGGTTGAATCCCTGGGGACCCAGCCGAGAAATACTGATAACTCCCCTGCACTTGAAATTGATTACTACTCGCAGGCTATAAAAGCGCTCAGTGAGCGCTCTCCTTTTGATGTTGCGGAAGAGACTTCAACGTCGACGGTGCCTACACTGCCCATTGGGTGGGCAAGCTTCTTAAACCGCCATTCTGAGAGTCGTAGGCGCCACAAGAAGTCCCATTCGGGCGCTGACAAGAAATCGTCTAGAGCATATGAGAAGTTGCGTAGTTCAAGTATATGGGTCGAGACTGAGGATTACTTTAGAGACTTGAAATTGCCGGACATAGACACCTTGTTGGAGGCATCCTCCTCTTTTTGTTTAGCTGCTCGGAAGTGTTTTTCTGTTCCCCCAGTTGGAAATGCGCCAAGATCAAATGTAGCTAGTTACGAGAATGACAAGGAAACTGATGGAAACCTAAATAGCGAGGATGTGAAGAATGAGAACCGTCTCATGGAAAGTAACAGCGTTGCTGCTGGAGCTTTTGCCCAGGATGACAAGGGTCACGATGCTTTTGATTCGTCTAGTAGTTTAGAATGGCTTTTAGGATGTAGGAATAAGATTTATTTGATTCCTCAGCGCCCTTCAAAGAGGAGGAAGCTTTTGGGCGGTGAATCTGGGTTGGATACATTTTTAATGACCAGTCCTTGTTATGGAGACTCTCCTCTGTGTCATTATTGCTGCAGGGGAGACACCGGTAGCGAGTCCAATCAATTAATTGTCTGCGTTATTTGTAAAGTTGCAGTTCATAAGAAGTGCTATGGTGTGCAAGATGATGCAGACGAGTCTTGGTTGTGCTCTTGGTGCCATCAAAAGGGTGACATTGATGAAATGGTGCATCCTTGTGTGCTTTGTCCAAAGAAGGGTGGTGCTTTAAAGCCTGTTCATAGACATGCGGAAAGTGTTGGATCTGCGCAATTTGCTCACTTGTTTTGTTGTTTGTGGATGCCTGAGGTTTATATAGAGGATTTGAAGAAGATGGAGCCTGTTATGAATGTAGGAGGAGTCCAGGAAACCCGGAAAAAATTAGTCTGTAATATTTGCAAGGTGAAATTTGGCGCATGTATTCGATGTAGCCATGGATCCTGCAGGTCTTCTTTCCACCCGTTATGTGCCAGGGAAGCTAGCCACAGGATGGAGGTTTGGGCCAAAAAAGGTCTTGACAATATTGAGTTGCGGGCCTTTTGTTCCAAGCACTCGGTTATACAAGAGAACAGCGCCATCTTGCCTTCAGGTGGTTCTGTAGCTTTTGGTAGTGGTTTATCTTCTGCTGACAGCCTTCGAGCAGGCACACACCACATTTTGAAAATTGGTTGCCAAAATGGAGACAATATTGGGATAGTTTCTGATAGTAGTCGTGATAAATTGAGTCATAGTGAACCACCGGATGAAACGTCTGATTGTCAGTTCAATGCTCATGAAACATCAGAATGTAGTGGTTTGCCACAACAAAATACTGCAGTGGTGGGAAGGACTGATGAAATTGCCAATGCATCTGAGTCCCTTGGTTTTGCGCTTCTTTTGAAAAAGTTGATAGATAGAGGAAAAGTTGATCTTAAAGATGTAGCTTTGGAGATTGGCATTTCTTCTGATACATTAAGCGCAAATATTAATGATTCTTGCATGGCCACTGATGTGCAACTCAAAATAGTCAATTGGCTAAAAGCTCATGTATATACTAATGCATTTCAAAAAAGTTTGAAAGTGAAATTCAAGCCTGCCAACTCATCCAAGGATGAAAATGGAATCACTGATGGTTCTGATACTCTACAGATATCGGATTCTGAGTTGCCAGATCCTGTTGCTGTTAAGTCAGTGCCATCAAGGAGAAGAACAACCGGTAATATCAGGATTCTGAAAGATAAAGTGATTTGTTCATCTGGGGCGTTGTCTAGTGAGAACGGAATGCCAATGGACGAGGTCAAAGGAGGTCAATCTGAACATGAAAATTCTGAAACATCAAACGAAGCATCCATTCTTGATGCAACTGAAATGAAATTAACCAAGTCTGAGGATGCTTTTTTTGATTCCCAAGGGAATGCAGATAAACCTGGCAAAATAATCTTATCTGGAGGCGTTTCGGAAGAAAAGCTTTCTGATTGCCACCATTCTTCTTGTTCTGCTGCAGATTTACCTGCTTCTGGTTTCATGGAGATTGAAGGAAACTCGTGTTACATTCACCCATACATCCATAAAAAGTTATCGCACATTCATGATGGGGTGCTTTCAGAGGATGTTATATGTGAAAGGGAGGAAGAAAATTTTTATTTAGACGGATTATCAGGGGCCAGTGGTGGCTCTAGTTACGAAAATCCTGAAGTGACATGCAGTGACATGTGTAAGGCGGATAAAGTAAATACAAAGCAATTGGTTATGGCTAGAAATATGGGTTTATTAGAATCTTGTCCAAAAGATGAAGTGGAGGGTGAACTAATATATTTTCAGCATAGATTATTGCAGAATGCAGTTGCAAGGAAGAAGTTTGCTGATAATTTAATCTCTAGTATAGCTAAGAGTCTTCCGCAGGAGATTGATGCTACACACCAGCAAAGATGGGATGCTGTACTTGTTAACCAGTATCTCCGTGATCTTAGGGAGGCAAAAAAGCAGGGCAGAAAAGAGAGAAGGCACAAGGAAGCGCAGGCAGTGTTGGCAGCTGCAACTGCAGCAGCAGCAGCCTCATCTAGGGTTTCTTCATTGCGGAAGGATGCCTTTGAAGAATCTGTACTGCCGGAGAATTTGTTAAAGCACAGTTTCAGTGGAAGGACTGGTGTTTGCTCTCAGCCATTGCCACGGGCCAAAGGAACACTTTCAAGAGTAGCTATGGTTAGGACTTCATCAGAAAAACATTCAGATTGTGGTCTGCCAGATGCAAATTTTTCTAAGGAGCATCCCAAATTATGTGATATCTGTAGACGATCTGAAACTATATTGAACCCAATTCTCATCTGCTCCGGTTGCAAGGTTGCTGTTCACTTGGACTGCTATCGTAGTGTGAAGGAATTCACAGGTCCATGGTACTGTGAATTATGTGAAGATTTATCATTTAGAATATCTGGGCAACCTTCTATAAATTCCTGGGAGAAACCTTATTTTGTTGCGGAATGTGGGATATGTGGTGGTACTACTGGCGCTTACAGGAAGTCTTCTGATGGTCATTGGGTCCATGCCTTTTGTGCTGAGTGGGTTTTTGAGTCGACTTTCGGAAGAGGACAAGTAACTGCTGTTGAAGGAATGGAAACTGTGTTGAAAGGAGTTGACATGTGTTGCATCTGCCACCGCAAGCATGGTGTATGCTTAAAGTGTAGCTATGGCCATTGTCAGACCACATTTCATCCATCCTGTGCTAGAAATGCTGGTTTTTACATGAATGTGAGGGCTGCAAGTGGCAAGCTGCAGCACAGGGCTTACTGTGAAAAGCATGGTTCAGAGCAGAGGACCAAGGCTGAAAGCCAAAAACATGGAATTGAAGAATTAAAAGGGATCAAGCAAATTAGGGTTGAGTTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAGATAAAGCGGGAATTGGTTCTATGTTCACACGACATACTTGCATTCAAAAGAGATCATGTTGCTAAGTCTGTCTTGGTGCATAGTCCTTTCGTCCTTCCTGATTGTAGTTCAGAATCAGCTACAACATCCCTTAAAGGGAACACAGAGGGATACAGATCATGCAGTGAAGCTGTCCAAAGGTCGGATGATGTAACGGTGGACAGCTCAGTTTCTGCTAAGCATCGAGTCCAAGTCAATGTGACCATGGACAGTGACCCAAAGTTGGATGATGACTGTTCAACTTCACAAAGCCATTATAATCATAAGATTCCTGAGAGGGTGCAGTTTTCTGGCAAGCAGATTCCTCAGAGAGCTTCCATCATATCGCGAAATATTTCAGATGACAGTGGATGGAGATCAAAATCAAGAAAGCATCAAGAGACATTTGGAAAAGAGTTGGTTATGACGTCAGACGAAGCATCAATGAAGAATTCATTGTTACCTAAAGGATATGCATATGTTCCTGCTGATTGCTTGTCTAATGATAAGCGATCTAAGCATGATGTATTTACTAGTGAGCCAGCGGAGCACAATGGTATCTGGGCATTTGAGGAGAATGGCAAAATGTATCTGGAAATCAGTGACACGGCTCCAGCTGGTACGAAGATGTGCCCTGCTCTAGCGGGGAAAGTCTAA 4359 0.4352 MTGGRCHRRRKMKGRGAEGGCGTEDMPCSVSRVPVESLGTQPRNTDNSPALEIDYYSQAIKALSERSPFDVAEETSTSTVPTLPIGWASFLNRHSESRRRHKKSHSGADKKSSRAYEKLRSSSIWVETEDYFRDLKLPDIDTLLEASSSFCLAARKCFSVPPVGNAPRSNVASYENDKETDGNLNSEDVKNENRLMESNSVAAGAFAQDDKGHDAFDSSSSLEWLLGCRNKIYLIPQRPSKRRKLLGGESGLDTFLMTSPCYGDSPLCHYCCRGDTGSESNQLIVCVICKVAVHKKCYGVQDDADESWLCSWCHQKGDIDEMVHPCVLCPKKGGALKPVHRHAESVGSAQFAHLFCCLWMPEVYIEDLKKMEPVMNVGGVQETRKKLVCNICKVKFGACIRCSHGSCRSSFHPLCAREASHRMEVWAKKGLDNIELRAFCSKHSVIQENSAILPSGGSVAFGSGLSSADSLRAGTHHILKIGCQNGDNIGIVSDSSRDKLSHSEPPDETSDCQFNAHETSECSGLPQQNTAVVGRTDEIANASESLGFALLLKKLIDRGKVDLKDVALEIGISSDTLSANINDSCMATDVQLKIVNWLKAHVYTNAFQKSLKVKFKPANSSKDENGITDGSDTLQISDSELPDPVAVKSVPSRRRTTGNIRILKDKVICSSGALSSENGMPMDEVKGGQSEHENSETSNEASILDATEMKLTKSEDAFFDSQGNADKPGKIILSGGVSEEKLSDCHHSSCSAADLPASGFMEIEGNSCYIHPYIHKKLSHIHDGVLSEDVICEREEENFYLDGLSGASGGSSYENPEVTCSDMCKADKVNTKQLVMARNMGLLESCPKDEVEGELIYFQHRLLQNAVARKKFADNLISSIAKSLPQEIDATHQQRWDAVLVNQYLRDLREAKKQGRKERRHKEAQAVLAAATAAAAASSRVSSLRKDAFEESVLPENLLKHSFSGRTGVCSQPLPRAKGTLSRVAMVRTSSEKHSDCGLPDANFSKEHPKLCDICRRSETILNPILICSGCKVAVHLDCYRSVKEFTGPWYCELCEDLSFRISGQPSINSWEKPYFVAECGICGGTTGAYRKSSDGHWVHAFCAEWVFESTFGRGQVTAVEGMETVLKGVDMCCICHRKHGVCLKCSYGHCQTTFHPSCARNAGFYMNVRAASGKLQHRAYCEKHGSEQRTKAESQKHGIEELKGIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVAKSVLVHSPFVLPDCSSESATTSLKGNTEGYRSCSEAVQRSDDVTVDSSVSAKHRVQVNVTMDSDPKLDDDCSTSQSHYNHKIPERVQFSGKQIPQRASIISRNISDDSGWRSKSRKHQETFGKELVMTSDEASMKNSLLPKGYAYVPADCLSNDKRSKHDVFTSEPAEHNGIWAFEENGKMYLEISDTAPAGTKMCPALAGKV 1452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0341 1452 MobiDBLite consensus disorder prediction 673 700 - -
Lele02g0341 1452 ProSiteProfiles Zinc finger PHD-type profile. 1009 1058 IPR019787 -
Lele02g0341 1452 MobiDBLite consensus disorder prediction 94 114 - -
Lele02g0341 1452 Coils Coil 905 925 - -
Lele02g0341 1452 MobiDBLite consensus disorder prediction 1 49 - -
Lele02g0341 1452 Pfam PHD-finger 1023 1056 - -
Lele02g0341 1452 Pfam PHD-finger 281 313 - -
Lele02g0341 1452 ProSitePatterns Zinc finger PHD-type signature. 1012 1055 IPR019786 -
Lele02g0341 1452 MobiDBLite consensus disorder prediction 621 638 - -
Lele02g0341 1452 MobiDBLite consensus disorder prediction 494 514 - -
Lele02g0341 1452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 322 IPR013083 -
Lele02g0341 1452 PANTHER PHD FINGER PROTEINS 92 948 - -
Lele02g0341 1452 MobiDBLite consensus disorder prediction 34 49 - -
Lele02g0341 1452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1001 1059 IPR013083 -
Lele02g0341 1452 ProSiteProfiles Extended PHD (ePHD) domain profile. 1077 1186 IPR034732 -
Lele02g0341 1452 Pfam PHD-zinc-finger like domain 1079 1185 - -
Lele02g0341 1452 Pfam PHD-zinc-finger like domain 325 443 - -
Lele02g0341 1452 SUPERFAMILY FYVE/PHD zinc finger 260 331 IPR011011 -
Lele02g0341 1452 CDD ePHD 1080 1185 - -
Lele02g0341 1452 SUPERFAMILY FYVE/PHD zinc finger 1002 1056 IPR011011 -
Lele02g0341 1452 ProSitePatterns Zinc finger PHD-type signature. 268 313 IPR019786 -
Lele02g0341 1452 MobiDBLite consensus disorder prediction 618 652 - -
Lele02g0341 1452 Coils Coil 1206 1226 - -
Lele02g0341 1452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1077 1188 IPR013083 -
Lele02g0341 1452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 445 IPR013083 -
Lele02g0341 1452 ProSiteProfiles Zinc finger PHD-type profile. 265 316 IPR019787 -
Lele02g0341 1452 SMART PHD_3 1011 1056 IPR001965 -
Lele02g0341 1452 SMART PHD_3 388 444 IPR001965 -
Lele02g0341 1452 SMART PHD_3 1132 1186 IPR001965 -
Lele02g0341 1452 SMART PHD_3 267 314 IPR001965 -
Lele02g0341 1452 ProSiteProfiles Extended PHD (ePHD) domain profile. 323 444 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0341 Lele-ChrLele02 1959432 1970369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0341 272 448 C2H2 Transcription Factor Family AT3G14740 31.667 2.76e-18 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele02g0341 zf-HC5HC2H_2 9.4e-23 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0341 02 1959432 1970369 Lele02g0341 02 1959432 1970369 ECH
Lele02g0341 02 1959432 1970369 Lele03g0354 03 2011836 2023813 hybridization
Lele02g0341 02 1959432 1970369 Lele04g0350 04 2064943 2076136 hybridization