Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0287 ATGAACCGTAATGTTGTGAAAAGCACTGAACAGACCGCGCCCGTTTTGGAATCGCTATTTGGCGCCATCAAGGCATCAGCCCTGAGCATTGTCGTTGGCTCAAAAAAACAAAATTACCCTTGCGCATTGTCGTTGGCCAAAAAAGTTGAGCTTCGTTGCTGGCAGCTGCGAATTTCACTTCAGCTCCTGCTTAAGAAAAAGCAAAGTGCAGCACTAACTATGGCGGAGACAACCTCTCCCATGCTCATTGACGACGATGATAACAACTCCGCCATACCCAACAAGGGCAAAAGCGTGGTCTTTGCCGGAAGTCCACCCGACAGCCGGGGTACTCCTTGGGTTGAAAAGTACCGCCCTAAATCCCTCGACGACGTTGCCGCACATCGCGACATTGTCGATACCATTGATAGGCTGACCTCTGAGAACAGATTACCCCATCTTCTATTGTACGGCCCTCCTGGCACGGGCAAAACATCAACTATTCTCGCTGTGGCCCGCAAACTCTATGGAGCACAATACAAAGACATGATTTTGGAGCTCAATGCATCAGATGACAGGGGAATTGATATCGTTCGCGAACAGATACAAAATTTTGCTAGCATGCGGAGCATCTCATTTGGGTTTTATGTTGGTCAGTCCAGAGGTTATACATTGGCTTCATATAAATTGTCTGTGTTTGTAGTCAAGTCCTCTGTAAAGCTGGTCTTGTTAGATGAGGCAGATGCAATGACAAAGGATGCACAATTTGCACTGCGTAGAGTGATTGAGAAATATACTAAAAAAACTAGGTTTGCACTTATCTGTAACCATGTAAACAAGATTATTCCAGCACTGCAATCAAGATGTACTCGATTTCGGTTTGCGCCCCTTGATGCTGTCCATATTACTGAGAGATTGAAGCATATTGTTAAGGCCGAAGGGCTTGATGTCACGGAAAGCGGCTTAGCAGCACTTGTTCGGCTTTGTAATGGAGATATGAGGAAGGCTTTGAACATTCTGCAGTCAACGCATATGGCTTCTCAGCAGATAACAGAAGAAGCTGTTTATCTTTGTACTGGAAACCCATTACCCAACGACATTGAGCAAATATCTTACTGGCTTCTGAATGAACAATTTTCAGATAGTTTTAAGAGAATACATGAAATCAAGACAAGAAAAGGATTGGCTCTGGTGGATATTGTGAGAGAGGTTACAATGTTTGTTTTTAAGATTAAGATGCCTCCAAGCGTTCGAGTACAGTTGATGAATGATTTGGCTGACATTGAATGTGCTGGGTACAGATTGAGTTTTGGGTGCAATGATAAGCTGCAGCTGGGATCGGTTATTGCTTCGTTCACCCGTGCTAGAGCTGCACTGGTTGCGGCTGCTAAGTAA 1374 0.4469 MNRNVVKSTEQTAPVLESLFGAIKASALSIVVGSKKQNYPCALSLAKKVELRCWQLRISLQLLLKKKQSAALTMAETTSPMLIDDDDNNSAIPNKGKSVVFAGSPPDSRGTPWVEKYRPKSLDDVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYKDMILELNASDDRGIDIVREQIQNFASMRSISFGFYVGQSRGYTLASYKLSVFVVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKKTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHITERLKHIVKAEGLDVTESGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPNDIEQISYWLLNEQFSDSFKRIHEIKTRKGLALVDIVREVTMFVFKIKMPPSVRVQLMNDLADIECAGYRLSFGCNDKLQLGSVIASFTRARAALVAAAK 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0287 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 348 IPR027417 -
Lele02g0287 457 Gene3D - 107 289 IPR027417 -
Lele02g0287 457 Gene3D - 355 455 - -
Lele02g0287 457 Pfam Replication factor C C-terminal domain 355 444 IPR013748 -
Lele02g0287 457 CDD AAA 131 289 - -
Lele02g0287 457 FunFam Replication factor C subunit 5 355 455 - -
Lele02g0287 457 FunFam Replication factor C subunit 5 106 290 - -
Lele02g0287 457 CDD HLD_clamp_RFC 290 352 - -
Lele02g0287 457 FunFam Replication factor C subunit 5 292 354 - -
Lele02g0287 457 Pfam ATPase family associated with various cellular activities (AAA) 147 287 IPR003959 GO:0005524|GO:0016887
Lele02g0287 457 Gene3D - 293 354 - -
Lele02g0287 457 SMART AAA_5 143 293 IPR003593 -
Lele02g0287 457 SUPERFAMILY post-AAA+ oligomerization domain-like 355 448 IPR008921 GO:0003677|GO:0006260
Lele02g0287 457 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 112 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0287 Lele-ChrLele02 1637315 1642034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0287 74 457 Core DNA Replication Machinery Family AT1G77470 71.756 0.0 568