Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0285 ATGGAACCAGAAAAGGGCAAACAGTCTTCCCACAAAACCCCATACACTGAACTCGAGCAAGTTAACTCTGATTTCATCCTAGCAATCGCTATGCAAGAGCAAGAGGGAACCTTCACCATGGACAGCGAAGAAAGCAGCAATGAAGATGAAAGTGAGTCCTCTTTTGAAGACGATGAAGTTGGAGATGCTGACTTTTCCGAGAGCCAAGAATTCGAATTCGGAGAGCTCGAGTTTCTTGAGGGCGAAGGAAGCAATGATGAAGAAATGGAAGAAGATGAGATTGATCCAGATGAAATGTCGTACGAAGAGTTGATCGAGTTGGCAGAGTTCATAGGAGAAGAGAGAAGAGGATTGTCAGCAAATGAAATCCCTTCCTGCCTCCATCCTTACACTTGCCATTTTGCTGAAAACAAGACAGGAATTGATCGCTGTGTGATATGCCAGATTGAATACGAAGAAGGTGAAGCACTGATGGCACTTCATTGTGAGCACCCTTATCATTCAGATTGCATCACCAGGTGGCTTAAGATTAAGAAGGTTTGTCCAATTTGTAGCTGTGAAGTCTCCTCTGCAAAACTGGCTAAATAA 588 0.4371 MEPEKGKQSSHKTPYTELEQVNSDFILAIAMQEQEGTFTMDSEESSNEDESESSFEDDEVGDADFSESQEFEFGELEFLEGEGSNDEEMEEDEIDPDEMSYEELIELAEFIGEERRGLSANEIPSCLHPYTCHFAENKTGIDRCVICQIEYEEGEALMALHCEHPYHSDCITRWLKIKKVCPICSCEVSSAKLAK 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0285 195 FunFam E3 ubiquitin ligase BIG BROTHER-related 110 191 - -
Lele02g0285 195 Pfam Ring finger domain 143 184 IPR001841 -
Lele02g0285 195 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 189 IPR033276 GO:0004842|GO:0016567|GO:0046621
Lele02g0285 195 MobiDBLite consensus disorder prediction 26 97 - -
Lele02g0285 195 ProSiteProfiles Zinc finger RING-type profile. 144 185 IPR001841 -
Lele02g0285 195 MobiDBLite consensus disorder prediction 42 97 - -
Lele02g0285 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 195 IPR013083 -
Lele02g0285 195 SUPERFAMILY RING/U-box 143 189 - -
Lele02g0285 195 SMART ring_2 144 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0285 Lele-ChrLele02 1632402 1632989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0285 91 188 C3H Transcription Factor Family AT3G63530 50.495 3.33e-30 109