Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0271 ATGGATAATTTAACAGCACAACCTAGTCAAGAAAAGGAAAATGGGAAATTGCAATCTGCAGCATCATCTGGACTTCCAGTTTCATGTATGCCTGGTGTTTCCTATGCTGAGCTTGTGAACGGAGATCTAGATGCTACACAGTCAGAAAACACTTCTATCTTTGTTAATGGGACAGATCCTGAAGCACCTCCAGCGCAACCCAAAAATGAACCAAACCTTGACAGCGCTGTAGCTAGAGATTCTGAATCTGATGATAATGACCTGTACTTATCAGAGTGCAGAATATCACTTGTTGGCTTTGAAGCTTCTGAAATGCGTAAGCTAGTTAATATGGTTCGTAAAGGAGGAGGATCCAGATATATGTCTCTTAGTGACAAGTTGACACACATAGTCATTGGAACCCCTTCGGAAATAGAAAAGAAGGATGTAAGGAGCCTGGCTGCTTTGGGTATCATCTACGTTGTTAAAACTACATGGCTTGAAGATTGTGACCGTGAAAAGAAAGAAGTCCCTGTTCTTAAGAGGCACATTGCGCAAGATCTTCTTCTTCCAAAAGGTTCAGCATCTTTTGTGAAAGGATATGTAACTGGCATTATGGGCGTGAATAAAAGTAAAGGTCATCAAAGCTTGCAGGCTGATCAGGTGATAACTAGTATGGACTCTAGATTTGTAATACCATTATCTGCGGAGAAAAAAGAAGAAAAGAAGCTGGAGATTGATGTGACACAGCAAATGCAACTTCCTGTCGTTAATAATAAAATGAATGATCAAAAGAAGATGCATAATGACTCTTCTCAGTGCGTGAAGTCATCAACAGTTTTCTGGGGGAGGACGTTCTGTTTTTCAAATTCTTTTCCTGAAGAGAGAAGAGATGAGATTATTCAATGGATAAGTCAAGGGAAAGGAGAGGTAGTACATGGGCACAGAAAACAGAATGCCCACTATACTATTGAATGTCATGGTGTAACAAGGAGGTTGGAAGAAATTTCCCAAACTACATATATTTCCAGTCATTGGATACGATCTTGTTTAGAGAATGACTGCTTGCTCGATGTTGATAGTCACATTCTTTATTCTCCACTGCCTTGCCGCATACCCTTGCCTGGGTTTGAAAGCTTTCGGTTTTGTGTTTCTCAATACGAGGGGAAAGACAGAATGCTTCTAAGGAACTTGTGCTTTGTTCTCGGAGCTACATTTGTGGAGAAGTTGTCAAAGAAAGTCACACATTTATTGTGTAAATTCATCAATGGGCCCAAGTACGAGGCTGCTTGTAAGTGGGGGATCCAAGTGGTTACCTCTGAATGGATAGTTGAATGTGTCAAACAGAATAAAGTTGTTGCTGTTGATCACTTTTCACCAAAAGAAGGTTCTGTTCAAGATCAAGAGAACCAAGAGGCAGGAGTTTTTACCACCAGTCAATTTCCTAACCGGGCTGACAGCATAAGTGGAGACAGCTCTGCCCAGTTTTCAAGTCGATCACAAAATTTGAGAAACATACCGAATCAAAATGCAGGTAGTCAAGTCGACAATTATGGGGTTGATGCTAAAATATCAAGTGTTCACTGCAAAAAGGTAAGGCTTTTGGAAGAGCCTGGCCTGTACGATACAGTGCCTTCTGCTGTAGCTTCAGCTACCCCTATCTACGGTATGAGTTCTACAGGAAACAATATGCTAATAGATACTAGTGATGTTTCTCCGGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACTAGTAAGATGCATGATCAGACATCCCCAGGGAAGACCGTGAATAAGCGAAATGTATCCTTCAAAACTAGGAAAGTTAATTCATTGTACATTTATTTTGTTAGTTTTTGTATTGAGCTTATGATTTTTTCCTCAGAAGTAGCAGAAACGAGGATAATGATGATGCTTCTCGGGATGGAAGAGCAGCTTATGATAATTTTAGTGAAACACAAACAGAATCTCAGGTTGTTGGTTATGAAGAAGATTTGTCTGGAAGACAAATGCTTATCGACAGGGTCCGAACACGTGGTAGTATGGCTTGAAGTATTAGGACAGCCCTTGAGGAAAGATCTAGAAGAATGTGCTAATTTGATGGTTTGA 2103 0.4056 MDNLTAQPSQEKENGKLQSAASSGLPVSCMPGVSYAELVNGDLDATQSENTSIFVNGTDPEAPPAQPKNEPNLDSAVARDSESDDNDLYLSECRISLVGFEASEMRKLVNMVRKGGGSRYMSLSDKLTHIVIGTPSEIEKKDVRSLAALGIIYVVKTTWLEDCDREKKEVPVLKRHIAQDLLLPKGSASFVKGYVTGIMGVNKSKGHQSLQADQVITSMDSRFVIPLSAEKKEEKKLEIDVTQQMQLPVVNNKMNDQKKMHNDSSQCVKSSTVFWGRTFCFSNSFPEERRDEIIQWISQGKGEVVHGHRKQNAHYTIECHGVTRRLEEISQTTYISSHWIRSCLENDCLLDVDSHILYSPLPCRIPLPGFESFRFCVSQYEGKDRMLLRNLCFVLGATFVEKLSKKVTHLLCKFINGPKYEAACKWGIQVVTSEWIVECVKQNKVVAVDHFSPKEGSVQDQENQEAGVFTTSQFPNRADSISGDSSAQFSSRSQNLRNIPNQNAGSQVDNYGVDAKISSVHCKKVRLLEEPGLYDTVPSAVASATPIYGMSSTGNNMLIDTSDVSPAVPDVAAAIEDLLEQTSKMHDQTSPGKTVNKRNVSFKTRKVNSLYIYFVSFCIELMIFSSEVAETRIMMMLLGMEEQLMIILVKHKQNLRLLVMKKICLEDKCLSTGSEHVVVWLEVLGQPLRKDLEECANLMV 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0271 700 Pfam BRCT domain, a BRCA1 C-terminus domain 271 354 IPR001357 -
Lele02g0271 700 Pfam twin BRCT domain 374 435 IPR001357 -
Lele02g0271 700 Gene3D BRCT domain 365 456 IPR036420 -
Lele02g0271 700 SMART BRCT_7 271 347 IPR001357 -
Lele02g0271 700 SMART BRCT_7 367 443 IPR001357 -
Lele02g0271 700 SMART BRCT_7 87 167 IPR001357 -
Lele02g0271 700 SUPERFAMILY BRCT domain 83 171 IPR036420 -
Lele02g0271 700 SUPERFAMILY BRCT domain 366 454 IPR036420 -
Lele02g0271 700 MobiDBLite consensus disorder prediction 474 507 - -
Lele02g0271 700 ProSiteProfiles BRCT domain profile. 269 357 IPR001357 -
Lele02g0271 700 CDD BRCT_TopBP1_rpt2_like 368 443 - -
Lele02g0271 700 FunFam Transcription coactivator 266 363 - -
Lele02g0271 700 FunFam Transcription coactivator 67 177 - -
Lele02g0271 700 MobiDBLite consensus disorder prediction 56 84 - -
Lele02g0271 700 Gene3D BRCT domain 71 175 IPR036420 -
Lele02g0271 700 ProSiteProfiles BRCT domain profile. 85 177 IPR001357 -
Lele02g0271 700 MobiDBLite consensus disorder prediction 1 24 - -
Lele02g0271 700 ProSiteProfiles BRCT domain profile. 370 453 IPR001357 -
Lele02g0271 700 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 14 603 - -
Lele02g0271 700 SUPERFAMILY BRCT domain 271 359 IPR036420 -
Lele02g0271 700 Pfam BRCA1 C Terminus (BRCT) domain 87 163 IPR001357 -
Lele02g0271 700 Gene3D BRCT domain 266 363 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0271 Lele-ChrLele02 1539380 1544342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0271 33 615 Core DNA Replication Machinery Family AT1G77320 43.528 1.23e-145 448