Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0261 ATGGACATGTATGTGAAATCAGGAGCTATCGCATGTTCTTCAAATATTTTTGCTGAACTGAATGGAAAAGATGTGATTTCATGGACCGTGAAGATAATGGGCTTTAGCCTACACTGTCAAGGGAAGATTGGAATTGATTTTTTCTGCCAGCTGGGGAAAAAGTCAAAGGCACGTATAGATAACACCACTTATGCTGCTGTCCTTCATGCATGCAGCACTGCACGCTTGGTTGAGGAAGGGAAGTTTTACTTCAACCGCATAAGGTCACCCAATGTGGCTCACTATGCTTCAATGGTTGCTCTGTTAGCACGAGTTGGGCTTTTTAACGAGGCGATGGCCTTTATTATGGAACACAACATTGGAAAACATGCTGAGGTACAGAGAAAATTGCTAGAAGGGTGCAGGATTCACCGACAACACACACTAGGTAAGCGAGTGGCTGAGCAACTTTGTGATTTGGAACCTCTAAATGCTGATAATTACGGGCTACTTCTGCATTAGAACAAAATTAATGTCTTTGGAACTGGGGATAGATCGCATCCAATATCAGCAAGAATATATTCGGAATTACAGCGTTTCATGGGGGAAATGAGAGTCCAAGGAGTTGAGCCTATTTGGGATTTCAACCTTCATGATGTAGATGAAGAGCGTGAGTGCATTCCGATTGAACACAGCGAACTATTAGCAATGTCCTTTGGGCTTTTATCGGTTCACGAGCTGGACCCATACGTGTTGCAAAAAATCGTACGGTATGTCATGGCTGCCACGATTTTGCGAAGTTCATTTCCAAGACCACCGGAAGAGAAATCATTCTCAAGGACCCATTCCTATTTCATCATCTTAGGGATGGATTCTGTTCAAATTTCAAAGGAACTTCTGGCTGGTTTTACAGTTGGAAAAGCTCTTGCCGGAGGTAAAAGAGTTGGGTTCTTTCACGGTCGAAGGATGGAAACTGAGGATGGAATAAGCAATGGGGATAACACAGAATGTTCTGAAGCGGTTCAGTGCCTGAAGAGTGAAGCTGTAAATAATGGGGTTGCAGATAGCAATGATGTTAAAATGGGGGTTCAGCGCTTTAATAGCGAAGCTTTGAATAATGGGGTGGTAATTGCAGACAGGAACGATGTTGCTCAAGGGGACTCTAGTGTAGTTGAAACCTTTCGAACTTACAAGAGACGTAAGCATGTAAAGTTGAATTCAAAAGGACGTAAGAATGTAAAGTTGAATTCAAAAAGCAAAGCTCAGGAAGATCGCAGAACATACTCTGAAGCTGCAAATCACATAGCAAGCCAGGCTGTAAAGAAACCGCGTAATGTAGCTGTAGGAAATACTTCGGATAAGCATTCACATGCACATTGGGGAAATGTTGTACTAATGCACTTGTATCCGTCCTTAGGTGATGATAAAGGTGGCATAGAAGGGTGCATGAGGGAAGCTCTCATGCGCCATCCTAAAATTAGTTGCGCTGCTACTTTAAAGGAAACTTGTAAAATTGACAAAGTTGGACAAGATTACTCTCCACACTTTGAGCTCATGTCTCATAGATTACGGAAGGAAGTTAATGGGCATGCAAATGTCTTGTGCAATGGATCTTGTAACGAGTCAGATGGTCCTGATGCAAATGAGATTTGTCAGCGTGTACTATGTAATGTCTTAGTCTCTGAGAAATTCAGTTCGTTATGTAAGGTGCTACTAGAAAATTTCAAAGGAATGAAGCCTGAAACTGTATTTGACTTCAGTGTCATAAACTCAAGGTTGAAAGAACAAGCTTATGAACAGTCACCCACACTTTTTTTGTCAGATATTCAACAGGTTTGGAGAAAACTTCAAGACGCTGGTAATGAGATTGTTTCTCTTGCCAAGGGCCTTTCAAACATGTCGAGAACTTTCTACTGTGAGCAGGCTGGAGTTTCAGTGCATAGCACATTCAAAGATGGAAAGCAGGAGTTCTGTAACCAGGAATCTGATTCTCACATGAAACCGGAGCAGACAGAAGACTGTGGCATGTATAAGATTTGTACTTGCAACCATTGTGGTAACAAGGCAAATGGGAAAGACTGTTTAGTCTGTGATTCATGTGAGGAGATGTTTCATATCTCATGTATTGAGCCTCCTGTCAAAGAGATACCCCATAAGAGCTGGTACTGTGCCAAATGCACAGCCAGTGGAATTGGATCTCCACATGAAAATTGTGTGGTATGTGAAAGGTTGAATGACTCAAAGACCCTGAACTTTGATGAAAGCTTCCCTGTAAACGAGGAAACAATTAATGAATTGGAAGACAATTCAAATTGCACCTATGATGGGGCTCAAGCATCTAGAAGGGGAAAAATTGACATGATCTGCAAAGTTTGTGAAAATGAAGTGGATGGTGAAAGAATTAGAATCTGTGGTCACTCCGCCTGCTCTAAGTACTATCATGTAAGGTGTTTGCCAAGTAAACAGTTAACATCATATGGTCCCTGCTGGTACTGTCCTTCTTGCTTATGCCAAGTTTGTCTCACTGATAAAGATGATGATCAGATTGTTCTCTGTGATGGCTGTGATGATGCTTACCACATATATTGCATGAAACCTCCCCGAACTTCTATTCCAAAAGGAAAATGGTTCTGCAGAAAATGTGATACTGGGTTACAAGTGATACGACGGGCCAAAAAGTTATACGAGAGTAAAAAGCAGAGAAAAACGAGCGAAGATGGTTCAAAACCAGGCAATAGATTTGAAAAAAATTGGAACAATAAACATGGACGAGATTTGGATAAAGGTGGAGGGATGGACATGCTTTTAACTGCAGCCAATACCTTGAATTTGGAAGAGGACTTGGCTGCAATCCGGACGTTATGA 2844 0.4167 MDMYVKSGAIACSSNIFAELNGKDVISWTVKIMGFSLHCQGKIGIDFFCQLGKKSKARIDNTTYAAVLHACSTARLVEEGKFYFNRIRSPNVAHYASMVALLARVGLFNEAMAFIMEHNIGKHAEVQRKLLEGCRIHRQHTLGKRVAEQLCDLEPLNADNYGLLLHXNKINVFGTGDRSHPISARIYSELQRFMGEMRVQGVEPIWDFNLHDVDEERECIPIEHSELLAMSFGLLSVHELDPYVLQKIVRYVMAATILRSSFPRPPEEKSFSRTHSYFIILGMDSVQISKELLAGFTVGKALAGGKRVGFFHGRRMETEDGISNGDNTECSEAVQCLKSEAVNNGVADSNDVKMGVQRFNSEALNNGVVIADRNDVAQGDSSVVETFRTYKRRKHVKLNSKGRKNVKLNSKSKAQEDRRTYSEAANHIASQAVKKPRNVAVGNTSDKHSHAHWGNVVLMHLYPSLGDDKGGIEGCMREALMRHPKISCAATLKETCKIDKVGQDYSPHFELMSHRLRKEVNGHANVLCNGSCNESDGPDANEICQRVLCNVLVSEKFSSLCKVLLENFKGMKPETVFDFSVINSRLKEQAYEQSPTLFLSDIQQVWRKLQDAGNEIVSLAKGLSNMSRTFYCEQAGVSVHSTFKDGKQEFCNQESDSHMKPEQTEDCGMYKICTCNHCGNKANGKDCLVCDSCEEMFHISCIEPPVKEIPHKSWYCAKCTASGIGSPHENCVVCERLNDSKTLNFDESFPVNEETINELEDNSNCTYDGAQASRRGKIDMICKVCENEVDGERIRICGHSACSKYYHVRCLPSKQLTSYGPCWYCPSCLCQVCLTDKDDDQIVLCDGCDDAYHIYCMKPPRTSIPKGKWFCRKCDTGLQVIRRAKKLYESKKQRKTSEDGSKPGNRFEKNWNNKHGRDLDKGGGMDMLLTAANTLNLEEDLAAIRTL 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0261 947 ProSiteProfiles Zinc finger PHD-type profile. 827 877 IPR019787 -
Lele02g0261 947 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 834 876 IPR013083 -
Lele02g0261 947 SUPERFAMILY FYVE/PHD zinc finger 665 720 IPR011011 -
Lele02g0261 947 Pfam PHD-finger 675 721 IPR019787 -
Lele02g0261 947 Pfam PHD-finger 830 875 IPR019787 -
Lele02g0261 947 PANTHER OS02G0192300 PROTEIN 577 721 - -
Lele02g0261 947 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 770 833 IPR013083 -
Lele02g0261 947 Gene3D - 563 722 - -
Lele02g0261 947 SUPERFAMILY FYVE/PHD zinc finger 779 830 IPR011011 -
Lele02g0261 947 MobiDBLite consensus disorder prediction 892 918 - -
Lele02g0261 947 FunFam PHD finger protein EHD3 isoform A 562 723 - -
Lele02g0261 947 SMART PHD_3 781 829 IPR001965 -
Lele02g0261 947 SMART PHD_3 674 720 IPR001965 -
Lele02g0261 947 SMART PHD_3 832 875 IPR001965 -
Lele02g0261 947 Gene3D Tetratricopeptide repeat domain 1 166 IPR011990 GO:0005515
Lele02g0261 947 ProSiteProfiles Zinc finger PHD-type profile. 670 722 IPR019787 -
Lele02g0261 947 SUPERFAMILY FYVE/PHD zinc finger 829 882 IPR011011 -
Lele02g0261 947 ProSiteProfiles Zinc finger RING-type profile. 782 828 IPR001841 -
Lele02g0261 947 ProSiteProfiles Zinc finger PHD-type profile. 779 831 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0261 Lele-ChrLele02 1482699 1490216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0261 1 250 Glycoside Hydrolase AT3G49170 30.612 2.03e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele02g0261 DYW_deaminase 1.2e-09 CL0109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0261 02 1482699 1490216 Lele02g0261 02 1482699 1490216 ECH
Lele02g0261 02 1482699 1490216 Lele03g0280 03 1542706 1547103 hybridization
Lele02g0261 02 1482699 1490216 Lele04g0267 04 1580470 1589679 hybridization