Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0252 ATGTTAGGCCGTGTAGTGCACGTTGGGTTTTGGTCAACAGTCAACGGCAGTTGGTCCCTGATCCATTCATTCAGTATTCGTATGATAAAGGAGTTGCGTAGAATGTGGGGAGAGGACCTGGTCAAAGTCGCTAACTTTTGTTGTATTTGGGAAGCTTCACCTTCACTCTCTGGAATGAATGCGTCATGCAATGCAGGCAAAGTCTCCGTCAACTTGGGACTCAAGGACACAGCCACAGCTACAATCTTTGCTTTCCCCATTTCTAGCTCCCAAAACAAGTTCGTAAGTGTAGGTTGTGACAGTTATGGCTACATAAAAGCCTTTGACGCTGAGCAGAATTATTATACCACTGGCTGCTTATCGCAATGTAAAAAACTTCCCCCACCAGCACAGAGTACTGGTGAAACTTGTTCCGGAATTGGGTGTTGCCAAGTCGATATTCCTCCTCGAATGAGGAATATCACTTTAGAATCACATAGCTTCAACAGTCATCAAAATGTGCGGGCTTTCAACAACTGCACCTATGCTTTTGTTGCCAAACAAGGCTCCTTTAATTTCTCTCCTCATTATCTTGAGCGTCTCCCCTTTAACGAGTCCAAGGTCGTGATAGATTGGTCTATTGTAGATTATGATACTTTTCAAGAAGCTCCCGCTCGGAGCACACCAAATCCTGTATGCAATCACAACGCCTTCTCTCAGAACTTCGACGGTGGATTCGGATACAGATGCTTTTGCAAGTCGGGGTTTCTTGGAAATCCATACCTTCCTGATGGATGTCAGGATGTTAATGAGTGCCACACACACAATAACTGTGATGCGCATGCGCAGTGCAACAATTTCGACGGTGGCTACAATTGTTCTTGTGCACCTGGTTATCAAGGCGATGGCTACGTTAATGGAACCCGCTGCACTTTGGACACACCTCTTCAGTCTAATCCTCATTTGCTTTCTCTTATAATAGCACTAGGAGTTTGTGTAACCTTGTTAGTTGGCTTCACCCTAGTCTCCTCATTATGCTGGGCACACAAGCAAAGAACTCTGAAACAAATTAGGCAAAGAAATTTCGAGCAAAATGGAGGAAACATGCTGCTGCAAAGACTTTCACAACAAGAAGGATACGCCGACAGAACCAAAATATTTACACAAGTGGAGCTTCAGAATGCCACAAACAACTTCGACGAAGATAGAATCCTTGGCCGTGGGGGACAAGGCACAGTTTACAAGGGTATATTACCCGACAACGCAGTGGTTGCCATTAAGAAGTCTAGAGTAGGAGGGGATCCCAGGCAGATTAAGGATTTTATCAATGAAGTGGTCGTGCTTTCCCAAATCAACCATCGGAATGTGGTCAAACTTTTGGGGTGTTGTCTTGAAACCGAAGTTCCTCTGTTAGTTTACGAGTTTGTGGACAATGGCACCCTTCTTGACCACATTGACCTATCAAAGAATGAACGCTCTATTTCATGGGAAACCCGATTAAGGATAGCAGCAGAAACTGCTGGGGCCCTACTTACCGGAAATAAAGCAGTTGAATACAATAGACTGGAACAGCGAAATTTGGCAATGTACTTTGTGTCTTCAATAAAAGAAGACCGTTTATGGGAAATTGTTGATAAGCAATTGTTAGATCAGGAGAAGAATGCTGAACAGTTGAAGGAAGTTGCTTTTCTGGCAAGGAGGTGTGTGAGAGTGAACGGAGAGGAAAGACCGACTATGAAGGAAGTAGCGATGGAATTGGAGGGTTTGATTGCAATGGAAAGGCATACTCGGGTGAAGGGTGGAGATACCATGGCAGAAGAAACTGAATGCTTAATTGTTCATGTGGCTGATGAATATGGGGATACCAGTTCTAGCAATGCATCTCGATATGATACCATACGAAAGCAGGTAGCATTTGAGATTGCAGATGGGCGTTGA 1917 0.4429 MLGRVVHVGFWSTVNGSWSLIHSFSIRMIKELRRMWGEDLVKVANFCCIWEASPSLSGMNASCNAGKVSVNLGLKDTATATIFAFPISSSQNKFVSVGCDSYGYIKAFDAEQNYYTTGCLSQCKKLPPPAQSTGETCSGIGCCQVDIPPRMRNITLESHSFNSHQNVRAFNNCTYAFVAKQGSFNFSPHYLERLPFNESKVVIDWSIVDYDTFQEAPARSTPNPVCNHNAFSQNFDGGFGYRCFCKSGFLGNPYLPDGCQDVNECHTHNNCDAHAQCNNFDGGYNCSCAPGYQGDGYVNGTRCTLDTPLQSNPHLLSLIIALGVCVTLLVGFTLVSSLCWAHKQRTLKQIRQRNFEQNGGNMLLQRLSQQEGYADRTKIFTQVELQNATNNFDEDRILGRGGQGTVYKGILPDNAVVAIKKSRVGGDPRQIKDFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFVDNGTLLDHIDLSKNERSISWETRLRIAAETAGALLTGNKAVEYNRLEQRNLAMYFVSSIKEDRLWEIVDKQLLDQEKNAEQLKEVAFLARRCVRVNGEERPTMKEVAMELEGLIAMERHTRVKGGDTMAEETECLIVHVADEYGDTSSSNASRYDTIRKQVAFEIADGR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0252 638 SMART egf_5 264 304 IPR000742 -
Lele02g0252 638 Pfam Protein tyrosine and serine/threonine kinase 395 502 IPR001245 GO:0004672|GO:0006468
Lele02g0252 638 Gene3D Laminin 215 300 - -
Lele02g0252 638 SMART egfca_6 261 304 IPR001881 GO:0005509
Lele02g0252 638 Gene3D Transferase(Phosphotransferase) domain 1 374 503 - -
Lele02g0252 638 Gene3D Transferase(Phosphotransferase) domain 1 504 602 - -
Lele02g0252 638 SUPERFAMILY EGF/Laminin 260 296 - -
Lele02g0252 638 ProSitePatterns Calcium-binding EGF-like domain signature. 261 286 IPR018097 GO:0005509
Lele02g0252 638 FunFam Wall-associated receptor kinase 2 362 468 - -
Lele02g0252 638 ProSiteProfiles Protein kinase domain profile. 392 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele02g0252 638 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 277 288 IPR000152 -
Lele02g0252 638 SUPERFAMILY Protein kinase-like (PK-like) 378 503 IPR011009 -
Lele02g0252 638 Pfam Calcium-binding EGF domain 261 296 IPR001881 GO:0005509
Lele02g0252 638 ProSiteProfiles EGF-like domain profile. 261 304 IPR000742 -
Lele02g0252 638 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 503 582 IPR045274 GO:0007166
Lele02g0252 638 CDD EGF_CA 261 295 - -
Lele02g0252 638 FunFam Fibrillin 2 256 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0252 Lele-ChrLele02 1430067 1433336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0252 503 638 Receptor kinase-like Gene Family AT1G21230 41.304 1.21e-19 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lele02g0252 PK_Tyr_Ser-Thr 2e-16 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0252 02 1430067 1433336 Lele03g0271 03 1498041 1500851 hybridization