Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0208 ATGAACATTCGCTTCCTCCTCTTCTTCTACATTCTTCGTCTTCCTCCAACAAGCATAGAAACATGCTCGGACGCCGTTTGCCAGAACGACAGCCTAATAATCCGATTCCCGTTTCGAATCCAACAGAGTCAGCAGCAGCCAAAGTCATGCGGTTATCCGGGTTTTGATGTATCTTGCAGTAAGGAAGGCCAAACACGGCTGAAACTCCCTCACACTGGAGGAGAATTCAGTATCCAGAGAATAGACTACGCAGCACAAGAACTATGGATCAATGATCCCAAGAACTGCCTCCCAAAACGCATTCTCTCCCTCAACCTCACTGGATCCCCATTTAGAGGCGTTTATTATCAAGATTTCTCATTCTTCAACTGTTCCTCCCGATCTCTCAAGTATCGGTATACCCCAATAGCTTGTCTAAGCGATTCCGGGCACACTATCTTTGCCACACCTTCCAGAACGGTTTTCATGCACTTGTTGGCGGTTTGCAGTTTCATTACTACAGTTAAGGTTCCGGTTCAGCAGCCGTTTTACGAGCACGTATCGTCGTCAGACCTGAGCGACAACCTCCGGCTGTCGTGGGAGTCGCCGCCGTGTGGGAGGTGCGAGTCCCGCGGTGGACGGTGTGGTTTCAAGGCTAATTCCACGGCTGACATTGCTTGTTCCTACTTTTCTTCCCAAGGTATTTCAAGGGCCGCACGTTATGCCATATGCCTATGCATAGCGGTGCCTGCGATGTTGGGCCTCATTGGGATGTTGCATTACATCGGCGGAAGGTGTAGGAGGGCCCAGGCAGTTGTTGGGCCACAACCACAGGCCGCACTGGTAACGGGCCTTGATGGGCCGACAATAGAGTCGTACCCAAAGCAAGTAGTGGGAGAGGCGGAAGAAGGGACGTGCCCAATATGCCTGAGCGAGTACAGGCCCAATGAGACCCTCAAGACAATACCCGCATGCCTCCACTCTTTCCATTCTCAATGCATCGATGCATGGCTTCCCTTGAATGCTTCCTGCCCTCTTTGCAGGACTTCTCCCCCCAACTCTCTGCCTTGA 1050 0.5162 MNIRFLLFFYILRLPPTSIETCSDAVCQNDSLIIRFPFRIQQSQQQPKSCGYPGFDVSCSKEGQTRLKLPHTGGEFSIQRIDYAAQELWINDPKNCLPKRILSLNLTGSPFRGVYYQDFSFFNCSSRSLKYRYTPIACLSDSGHTIFATPSRTVFMHLLAVCSFITTVKVPVQQPFYEHVSSSDLSDNLRLSWESPPCGRCESRGGRCGFKANSTADIACSYFSSQGISRAARYAICLCIAVPAMLGLIGMLHYIGGRCRRAQAVVGPQPQAALVTGLDGPTIESYPKQVVGEAEEGTCPICLSEYRPNETLKTIPACLHSFHSQCIDAWLPLNASCPLCRTSPPNSLP 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0208 349 Pfam Ring finger domain 298 341 IPR001841 -
Lele02g0208 349 Pfam Wall-associated receptor kinase C-terminal 158 222 IPR032872 -
Lele02g0208 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 346 IPR013083 -
Lele02g0208 349 CDD RING-H2_PA-TM-RING 298 341 - -
Lele02g0208 349 SUPERFAMILY RING/U-box 294 344 - -
Lele02g0208 349 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 344 - -
Lele02g0208 349 Pfam Wall-associated receptor kinase galacturonan-binding 22 92 IPR025287 GO:0030247
Lele02g0208 349 ProSiteProfiles Zinc finger RING-type profile. 299 341 IPR001841 -
Lele02g0208 349 SMART ring_2 299 340 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0208 Lele-ChrLele02 1140960 1142741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0208 20 344 C3H Transcription Factor Family AT2G46495 36.686 2.33e-68 216