Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0200 ATGGTCGGCTCCGCCATCTCTGTTGGCATTGTCATCGGTGGCCGTGGCCGCGGTTCCTCCCAAAATGGGGTGGCCATCCGGGGGAAGCCCACGGAGGCAATTTCTAGGACCTGCAGCAAAACCCAGTACCCCAATCTGTGTGTGAACTCTTTGCTCGAGTTCCCGGGTTCGACGACGGCCTCGGAGCAAGAACTTGTCCACATTTCCCTCAACATGACGCTGCAGCACCTGAGCAAAGCTCTGTACTCCTCCAGCGGGATCTCCTACGTCCAGATGGATCCGCTCGAACGATCGGCTTACGAGGACTGCATCGAGCTCCTGGAGGATTCCGTGGACGCTCTCGCACGCTCCCTCACATCCGTCGCCCCCTCCCCGTTCGACGGGAGCATCAAAGCGGTCGAGTCCGCCGACGATGTCATGACGTGGCTGAGCGCCGCTCTCACGAGTCAAGACACGTGCACGGAGGGGTTAGCGGGGACGAAGGTGTCCGTGAGGGATCAGATGGCCAACAGTTTGAAGGACTTGTCGGAGCTGGTGAGCAATTGCCTGGCGATATTCGCGGGAAGCCGGGGTGACGGCGGCGATTTCTCGGGGGTGCCCATACAGAACAGGAGGAGATTGATGAGAGAGGATAATGCAGATGAGTGGGGCAAGAATAATCCGGGTAATTTTCCGAAATGGTTGAGCAGACGAGATAGGAGATTGCTGAGCCTACCAGCATCGGAGATCCAAGCAGATATAATCGTGTCGAAGAAGGGGAATGGAACATTCAAGACGATCGCGGAGGCCATCAAGAAGGCGACGGAGCACAGCGTTCGCCGTTTCATTATTTACGTGAGGGCAGGAAGGTATGAAGAGAAGGATTTGAAGGTGGGAAGGAAGAAAACCAATGTGATGTTGATAGGGGACGGCATGGGCAAGACAATCATCAGGGGCAAACGAAATGTTATGGATGGCCTCACCACATTCCACACCGCTTCCTTCGCTGCGACTGGTGCCGGTTTCATCGCCCGTGACATATCATTCGAGAACTACGCCGGCCCGAGCAAGCACCAGGCTGTGGCACTCCGTCTAGGAGCCGACCACGCGGTGGTTCACCGCTGCGAGATCCTGGGATACCAGGACACGTGTTATGTCCATTCCAACCGTCAATTCTTCCGCGAATGTCGCATTTACGGAACAGTTGACTTCATTTTTGGGAACGCTGCGGTCGTTTTCCAAAACTGCAGTCTCTATGCTCGGAAGCCGATGGACCAACAAAAAAACACCATCACAGCCCAAAACCGGAAAGACCCCAATCAGAACACGGGTATATCGATCCATAACTGCCGGATCCTTCCGGCACCGGACCTTGAGCCGGAGAAGGGAAGCATCTATACCTATCTTGGCCGTCCATGGAAATTATACTCTAGAACTGTGTATATGCTATCATTCTTCGACGATCACATACATCCACAAGGATGGCTGGAGTGGGACGCGTCATTTGCTTTGGACACATTGTATTATGGCGAGTACATGAATTATGGGCCGGGTGCGGCCATTGGAAAACGGGTCAGATGGCCAGGGTACCGGGTGATTACCTCACCCGTGGAGGCAAGAAGGTTCACGGTGGCGGAATTCATATCGGGTTCGTCGTGGCTGCCGTCAACGGGAGTGGCATTTGTGGCTGGGCTGTCTACTTGA 1683 0.549 MVGSAISVGIVIGGRGRGSSQNGVAIRGKPTEAISRTCSKTQYPNLCVNSLLEFPGSTTASEQELVHISLNMTLQHLSKALYSSSGISYVQMDPLERSAYEDCIELLEDSVDALARSLTSVAPSPFDGSIKAVESADDVMTWLSAALTSQDTCTEGLAGTKVSVRDQMANSLKDLSELVSNCLAIFAGSRGDGGDFSGVPIQNRRRLMREDNADEWGKNNPGNFPKWLSRRDRRLLSLPASEIQADIIVSKKGNGTFKTIAEAIKKATEHSVRRFIIYVRAGRYEEKDLKVGRKKTNVMLIGDGMGKTIIRGKRNVMDGLTTFHTASFAATGAGFIARDISFENYAGPSKHQAVALRLGADHAVVHRCEILGYQDTCYVHSNRQFFRECRIYGTVDFIFGNAAVVFQNCSLYARKPMDQQKNTITAQNRKDPNQNTGISIHNCRILPAPDLEPEKGSIYTYLGRPWKLYSRTVYMLSFFDDHIHPQGWLEWDASFALDTLYYGEYMNYGPGAAIGKRVRWPGYRVITSPVEARRFTVAEFISGSSWLPSTGVAFVAGLST 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0200 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 186 IPR035513 -
Lele02g0200 560 TIGRFAM PME_inhib: pectinesterase inhibitor domain 29 186 IPR006501 GO:0004857
Lele02g0200 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 188 IPR035513 -
Lele02g0200 560 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Lele02g0200 560 Pfam Plant invertase/pectin methylesterase inhibitor 33 185 IPR006501 GO:0004857
Lele02g0200 560 PANTHER PECTINESTERASE 11 548 - -
Lele02g0200 560 Gene3D - 240 558 IPR012334 -
Lele02g0200 560 FunFam Pectinesterase 240 558 - -
Lele02g0200 560 FunFam Pectinesterase 30 189 - -
Lele02g0200 560 CDD PMEI-like_3 38 187 - -
Lele02g0200 560 SUPERFAMILY Pectin lyase-like 243 557 IPR011050 -
Lele02g0200 560 Pfam Pectinesterase 246 543 IPR000070 GO:0030599|GO:0042545
Lele02g0200 560 SMART PMEI_2 29 185 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0200 Lele-ChrLele02 1080874 1083787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0200 1 559 Carbohydrate Esterase AT5G53370 65.302 0.0 763