Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0196 ATGGGCTTGGATAACATTGAGTGTGTGTCATCCTCGGATGGTATTGACGAGGACGAGATCCACCATCGTGGTATACATCCTCACCCCCGTCATCACTCTGAGTTTTCATCCTCAAAGCCTCGCAATGGCGCCACCAATATGGCCCCCGCGGCCATTGCTCCGGCAACCAGTGTCCACGAGTTGCTGGAATGCCCTGTCTGTACCAATTCTATGTACCCACCAATTCATCAGTGTCACAATGGGCACACCCTATGTTCAACATGTAAAACAAGGGTGCACAACCGATGCCCCACATGCAGACAAGAGCTTGGGGATATTAGATGTTTGGCTCTGGAGAAGGTAGCGGAATCACTTGAGTTACCATGCAAATACTATTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTCAAGCATGAGTCAGTGTGCAGCTTTAGACCATACAATTGTCCTTATGCTGGATCAGAGTGTTCAGTTGTTGGGGACATCCCTTTCCTCGTTGCACATCTGAGGGACGATCATAAGGTGGACATGCACACAGGATGTACATTCAACCATCGTTATGTGAAGTCAAATCCCCGTGAAGTAGAGAATGCCACTTGGATGCTCACTGTATTCCAATGTTTTGGGCAATACTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGGATGGCCCCCGTTTACATGGCATTCCTTCGTTTCATGGGAGACGAGAATGAGGCTCGAAACTATAGCTATAGCCTAGAAGTTGGGGCAAATGGCAGGAAACTGATTTGGGAGGGTACTCCAAGAAGTATCCGGGATAGCCATCGTAAAGTCAGGGACAGTCATGACGGTCTTATCATCCAACGAAATATGGCCCTTTTTTTCTCTGGCGGCGACAGGAAGGAGCTTAAGCTCAGAGTTACTGGAAGAATATGGAAAGAACAACAGAATCCAGATTCTGGGGTGTGCACACCAAATCTTTGTAGCTGA 981 0.4771 MGLDNIECVSSSDGIDEDEIHHRGIHPHPRHHSEFSSSKPRNGATNMAPAAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHESVCSFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFQCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDSGVCTPNLCS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0196 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 116 IPR013083 -
Lele02g0196 326 Pfam Seven in absentia protein family 106 305 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lele02g0196 326 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 43 311 - -
Lele02g0196 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 170 IPR013083 -
Lele02g0196 326 SUPERFAMILY RING/U-box 56 104 - -
Lele02g0196 326 SUPERFAMILY TRAF domain-like 117 309 - -
Lele02g0196 326 MobiDBLite consensus disorder prediction 18 45 - -
Lele02g0196 326 FunFam E3 ubiquitin-protein ligase SINAT3 116 172 - -
Lele02g0196 326 CDD RING-HC_SIAHs 62 100 - -
Lele02g0196 326 CDD Sina 178 306 - -
Lele02g0196 326 MobiDBLite consensus disorder prediction 18 37 - -
Lele02g0196 326 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 171 305 IPR008974 GO:0005515
Lele02g0196 326 ProSiteProfiles Zinc finger RING-type profile. 64 100 IPR001841 -
Lele02g0196 326 ProSiteProfiles Zinc finger SIAH-type profile. 117 177 IPR013010 GO:0008270
Lele02g0196 326 FunFam E3 ubiquitin-protein ligase SINAT3 11 115 - -
Lele02g0196 326 FunFam E3 ubiquitin-protein ligase SINAT5-like 173 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0196 Lele-ChrLele02 1063588 1066001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0196 36 312 C3H Transcription Factor Family AT2G41980 76.895 5.35e-163 455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0197 01 1103760 1106395 Lele02g0196 02 1063588 1066001 ECH
Lele02g0196 02 1063588 1066001 Lele02g0196 02 1063588 1066001 ECH
Lele02g0196 02 1063588 1066001 Lele03g0203 03 1077376 1080006 hybridization
Lele02g0196 02 1063588 1066001 Lele04g0193 04 1069240 1078544 hybridization