Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0182 ATGTCGCTCCGACGGAGGACTCACGCGCTGAAACCGGCATCTAAGTCCCCTTCCGTCGGTAAATCGTCCGATTACGATGACCTGTGCTGCGAAGAATGTGGATCCGGCCACTCGCCGGCCAAGTTGATTCTTTGTGACAAATGTGATCGAGGATACCACCTCTTCTGCCTCAGACCCATACTTGTTTCTGTGCCAAAAGGGTCTTGGTTCTGCCCCTCCTGCTCTAAAAACAAGAAGCCCAAGTATATCCGAAAGAAACGAAAGCGGGCTACAAGCCTAGTGCTGTCGAAAAAGAAAAGAAAGCTGCTGCCATTCTGCCCGAGTGAGGATCCTTCAAGGAGATGGGAACAGATGGCATCTCTGGCAACGGCACTGACGGCAACTGATACAGAATACAGTAATGAGCTTACTTACATGCCTGGAATGTCACCGAGATCAGCTAATTGTGCTTCTCTTGAAAAGGGTGGAATGCAGGTTCTGTCCAAGGAAGATACGGACACCTTGAACTTGTGCAAGAGTATGATGGAAAGAGGAGAATGTCCACCACTCATGGTTGTTTTTGATCCTCAAGAAGGGTTCACTGTTGAAGCAGATAAGTGGATAAGAGACTTAACAATAGTCACAGAGTATGTTGGGGATGTTGACAATTTGAGGAATCGTGAAAATGATGACGGGGATAGCATGATGACACTTCTTTCCGCTTCTGATGCTTCACGAACGTTAGTAGTCTGTCCGGACAAACGAAGTAACATTGCGCGGTTTGTTAATGGCATTAACAATCACACACCGGAAGGGAAGAAAAAGCAGAACTTAAAATGCGTGAGGTTCGAAGTCAATGGGGAGTGCCGGGTTCTACTGATTGCAAACAGAGACATATCGAAGGGGGAGAGATTGTACTATGACTACAACGGAAGTGAGCATGAATATCCAACGGAACACTTCGTGTAA 948 0.4694 MSLRRRTHALKPASKSPSVGKSSDYDDLCCEECGSGHSPAKLILCDKCDRGYHLFCLRPILVSVPKGSWFCPSCSKNKKPKYIRKKRKRATSLVLSKKKRKLLPFCPSEDPSRRWEQMASLATALTATDTEYSNELTYMPGMSPRSANCASLEKGGMQVLSKEDTDTLNLCKSMMERGECPPLMVVFDPQEGFTVEADKWIRDLTIVTEYVGDVDNLRNRENDDGDSMMTLLSASDASRTLVVCPDKRSNIARFVNGINNHTPEGKKKQNLKCVRFEVNGECRVLLIANRDISKGERLYYDYNGSEHEYPTEHFV 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0182 315 ProSiteProfiles SET domain profile. 181 303 IPR001214 GO:0005515
Lele02g0182 315 SMART PHD_3 29 75 IPR001965 -
Lele02g0182 315 Pfam PHD-finger 30 76 IPR019787 -
Lele02g0182 315 FunFam Histone-lysine N-methyltransferase ATXR5 87 315 - -
Lele02g0182 315 SUPERFAMILY SET domain 129 305 IPR046341 -
Lele02g0182 315 ProSitePatterns Zinc finger PHD-type signature. 30 74 IPR019786 -
Lele02g0182 315 ProSiteProfiles Zinc finger PHD-type profile. 27 77 IPR019787 -
Lele02g0182 315 MobiDBLite consensus disorder prediction 1 24 - -
Lele02g0182 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 89 IPR013083 -
Lele02g0182 315 Gene3D SET domain 90 315 IPR046341 -
Lele02g0182 315 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 75 313 - -
Lele02g0182 315 SUPERFAMILY FYVE/PHD zinc finger 22 86 IPR011011 -
Lele02g0182 315 CDD PHD_RSF1 30 74 - -
Lele02g0182 315 CDD SET_ATXR5_6-like 178 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0182 Lele-ChrLele02 984878 987026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0182 12 74 C2H2 Transcription Factor Family AT3G01460 31.746 6.81e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele02g0182 PHD 6.3e-10 CL0390