Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0160 ATGTCACAGCAGAGCCAAAATAAGATGGTGAGCCCAAACAATGCCAAGCAAGTTGGCGACACAACCTATACCAAGATCTTCGTTGGAGGACTCGCCTGGGAGACCAAAAGGGACACTCTGAAACACTATTTTGACCAGTTCGGAGAGATCTTAGAGGCTGCTGTTATACACGACAGAAACAGTGGAAGATCAAATGGCTATGGCTTTGTGACATTCAAGAGCCCAGATTCTGCGATAAGAGCCTGCCAGAATCCCTATCCTATGATTGATGGGAGGAGAGCTAACTGTAATCTTGCAGCTCTAGGTGCACAGAGATTCAATCCATATGCAACAGTCGCAGGAAAGGAGAAATTTTGCGCAACTTCTTGGCCTAGGGTTTTAGTTCCAATTCAAGGAATCCCCTCTTATTACAATCAACACATACCCCAGTATGCGTTCCCTTATCCATCATTTAGGTATCATGGATATCCGCCCACACAGGAAATTTACGCAATGAACTATTATAATGTCTATGGAGGGCAGCAAATTCCTATCCGTTGGCCTTCAGTATATTACCGGCCGTTTAATGGGGCTAGACAGATGGTTCCACCAGCATATTTGAAAAAGGCACAATACCCTGACGCTTCATCTCAGGCATCGTTCACAGTCGTCGGCTTATCACAGCCTATCTCAGCTTCTCCTTCAATACCCACCACAGGTTCACCATCTAACCAATGCTACATATACATTATCTTCTTCTTGCTCTGTCAATTCTTCCTCGCCTTAAGTACTTTCTTGGAACAGGGGATGCTGCTTCTGCAGCAGGAATGGCCGGAACCTCCCCTGAGCAGAAATCTTGAGCTTAAGCTACAGAGAAGAGATCCCAGCAATGGGGACAAAGAAGAAGAAGAAAAGTGGTAA 900 0.4544 MSQQSQNKMVSPNNAKQVGDTTYTKIFVGGLAWETKRDTLKHYFDQFGEILEAAVIHDRNSGRSNGYGFVTFKSPDSAIRACQNPYPMIDGRRANCNLAALGAQRFNPYATVAGKEKFCATSWPRVLVPIQGIPSYYNQHIPQYAFPYPSFRYHGYPPTQEIYAMNYYNVYGGQQIPIRWPSVYYRPFNGARQMVPPAYLKKAQYPDASSQASFTVVGLSQPISASPSIPTTGSPSNQCYIYIIFFLLCQFFLALSTFLEQGMLLLQQEWPEPPLSRNLELKLQRRDPSNGDKEEEEKW 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0160 299 Gene3D - 1 110 IPR012677 -
Lele02g0160 299 PANTHER BOULE-RELATED 9 221 IPR037366 -
Lele02g0160 299 CDD RRM_RBM24_RBM38_like 24 99 - -
Lele02g0160 299 SUPERFAMILY RNA-binding domain, RBD 12 99 IPR035979 GO:0003676
Lele02g0160 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 84 IPR000504 GO:0003723
Lele02g0160 299 MobiDBLite consensus disorder prediction 279 299 - -
Lele02g0160 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Lele02g0160 299 SMART rrm1_1 25 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0160 Lele-ChrLele02 884442 885897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0160 20 100 C2H2 Transcription Factor Family AT2G19380 40.741 2.09e-14 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0154 01 892205 893528 Lele02g0160 02 884442 885897 ECH
Lele02g0160 02 884442 885897 Lele02g0160 02 884442 885897 ECH
Lele02g0160 02 884442 885897 Lele03g0162 03 867813 869201 hybridization
Lele02g0160 02 884442 885897 Lele44g0270 44 1948414 1950290 hybridization