Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0159 ATGGCGGTAGCTGAGAATGCCGGAGCCATAATCGGCTCATCCAGTCAAAATTTAGATAACAGTGTAGTATCATCGGACTCAACTGTGACAAATGAGCTCGAGAAATCGAAACCCAGAACTGTGGCAACTGGAAATGGTTTAGAAACAGATGTTCAACCTGTCAACGGCGATGAGAGTCTGGATGATGTGTTCGGCCATCAGGATAGAGCTCCGTCGGTCCCTAACGGCAATTACAAGTCTCAAATCACTCAGATGCGAAATGGGTTCGAGGCAAATGGGGTTCAGAACCAGCAGATGGTGCTAAATAATAGCGGATACGGAATTAAGCAAATGTCTAACGGTGTAGGGAACGGTGAAGATGGTGGCGAGAGTTTCAAGCGTGATATGAGGGATTTGGCAGAGTTGTTGTCAAAGTTGAATCCCATGGCCGAGGAATTTGTACCACCATCACTTACCAATAATCACGGATTCTTAGGTGGTGCTGGGTTTAGTTACCCCAACAACTTTCTACCCCACACTAATTACGGCAATGCAAATGGACATACTAACCCAAGGAGGAAGAACGGATATAATCAAGGCAAGCGTAGAGCTAATAATAAAATGGAAGTGGAGAAGAGAGAAGACATGATTAAGAAGACTGTATATGTTTCTGACATTGATCAACAGGTCACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGCGGACAGCGTAGGAATGTACTTTTCTCTCTATTAATTAATAGTGATATGCCTGCAGAAGGTGCGAGGGCTGCTTTGAACCTGTCTGGCACTATGCTTGGATATTACCCAGTGAGAGTGCTGCCTTCAAAAACTGCTATCGCACCATCTGAAGATGAACGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATTGACAAGAAGGTTACGCAGGCAGATGTTAAGCTCTTTTTTGAATCTCTTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCACAATGGTAACTGCTCACTTTTGGACTATTTCATCTGAATCAGCTTGCAAGGTTGCCTGTAGCTACGGCAACTTAAGGGAAGAAGGAAAGGATAAGTGTCGCGTTAATATCCCTTGCCAGGAAACTCTTATCCATTTGCAATATTTTGAGGTTGAAGTTTACTTTGGGTCATGGAAGGATATAGTGGTTTTTAGGTTCCCTTGAGACCTGGCTAGCACGGACCTAGTGGGTTTTTATTCTGTTTCCTCATATGAAATGTTGATACAAGCTGAAAGTGCAATTGCAGCTCTGAACTGCAGTGGTGTGATTTTGGGTTCGCTGCCTATCAGAGCTGGATCTGGCTGGGATGGCACTTCGAGGATCTTTGATGGCTTAATTTATGACACTCAATTTGATGGATTCTTCTTGAGACCAGAGAATTTTATGGTTGGATGTCGCTTAACATTTGTTGTTTCTCATGCCATTAAACTAATATTTTTGGTTTACGTGAGGTGGTTAAAAGCTAAAGCTATATCATGGACAGGAGGTGTATAA 1554 0.4299 MAVAENAGAIIGSSSQNLDNSVVSSDSTVTNELEKSKPRTVATGNGLETDVQPVNGDESLDDVFGHQDRAPSVPNGNYKSQITQMRNGFEANGVQNQQMVLNNSGYGIKQMSNGVGNGEDGGESFKRDMRDLAELLSKLNPMAEEFVPPSLTNNHGFLGGAGFSYPNNFLPHTNYGNANGHTNPRRKNGYNQGKRRANNKMEVEKREDMIKKTVYVSDIDQQVTEEQLAALFLNCGQRRNVLFSLLINSDMPAEGARAALNLSGTMLGYYPVRVLPSKTAIAPSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMVTAHFWTISSESACKVACSYGNLREEGKDKCRVNIPCQETLIHLQYFEVEVYFGSWKDIVVFRFPXDLASTDLVGFYSVSSYEMLIQAESAIAALNCSGVILGSLPIRAGSGWDGTSRIFDGLIYDTQFDGFFLRPENFMVGCRLTFVVSHAIKLIFLVYVRWLKAKAISWTGGV 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0159 517 MobiDBLite consensus disorder prediction 174 196 - -
Lele02g0159 517 SUPERFAMILY RNA-binding domain, RBD 212 344 IPR035979 GO:0003676
Lele02g0159 517 SMART rrm1_1 213 275 IPR000504 GO:0003723
Lele02g0159 517 SMART rrm1_1 294 376 IPR000504 GO:0003723
Lele02g0159 517 MobiDBLite consensus disorder prediction 15 80 - -
Lele02g0159 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 341 IPR000504 GO:0003723
Lele02g0159 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 340 IPR000504 GO:0003723
Lele02g0159 517 Gene3D - 286 346 IPR012677 -
Lele02g0159 517 MobiDBLite consensus disorder prediction 15 52 - -
Lele02g0159 517 Pfam Ataxin-2 C-terminal region 136 150 IPR009818 -
Lele02g0159 517 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 134 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0159 Lele-ChrLele02 879327 883381 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0153 01 885968 889928 Lele02g0159 02 879327 883381 ECH
Lele02g0159 02 879327 883381 Lele02g0159 02 879327 883381 ECH
Lele02g0159 02 879327 883381 Lele03g0161 03 860787 866119 hybridization
Lele02g0159 02 879327 883381 Lele04g0156 04 882448 886146 hybridization