Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0153 ATGGGTGATTTGAAAGCAGTGGAAGCCAAGGAGAGCGAGAAGGAGAAGGAGAGAACAGGGGACGAGGAGGAAAGTGGAACAGAGAGTAAAGGGGGAGAATTGAGTGGTCTGATGAGGTGGGAGAAATTCTTGCCCAAGATGATATTGAGGGTTCTCTTGGTTGAAGCTGATGATTCCACCCGCCAGATTATCGCTGCACTTCTCAGGAAATGCAGCTACAGAGTGGCTGCTGTTCCTGATGGCCTGAAAGCTTGGGAATTACTGAAGGGAAGATCACACAACATCGATCTAATACTGACAGAAGTAGATTTGCCTTCCATATCTGGCTATGCGCTTCTCACCTTAATTATGGAGCATGAGATTTGCAAAAGCATTCCTGTTATAATGATGTCCTCACAAGATTCGATTAGCACAGTATACAAGTGCATGTTGAAAGGTGCTGCTGACTATCTTGTTAAGCCCATTAGAAAAAATGAGCTGAGGAACTTGTGGCAGCATGTTTGGAGAAGGCGATCATCAGTAATCGGTTTAAATGGTCTTCAAGATGAGAGTGTTGCGCAACAGAAGGTTGAAGCCACTGCCGAAAATAATGCTGCTAGCCATTCAAGTGGAGATGCCGCATGCATTCAAAAAAATAAGGAATTAATTGAGAAAGGAAGTGATGCTCAGAGCTCCTGTACAAAGCCTGATTTGGAAGCTGAAAGTGCCCCTATGGAAAATGTTGAGGAATTTGCTCATCTAAGATGTGGTGACTCGAATCCGAGTGATGAAAAGATTCAGGAGGTTGAAGCTTGTATTCATTTAGGCTGCACATCGACTTTGCATGATAATCATGCTGGAGGATCAACTGTGGGTATCCACACAAATGGTAAGACGAGCACAACTCATGGCACGGATGGCTGTCCAGAGAATAGGAGTGCTAGTATCAGTGTTGAAGCTCATGATAATCACTGTGTTCAAATTAGCTCTTCCAAGGAAGCTATAGACTTGATTGGAGCATTTCATGCTAATTCAAAATGCAGTCCCAAAAGTTCCACAATCAGTTGTACGGGCACGTTTGAGTTCTCTCCACATTTAGATCTTTCCTTAAGAAGAGATCATCCCAGCAGCTTTGAGAATGAAGTCTCCAAAGATAGGCAAACCCTCACGCATTCCAATGCCTCAGCTTTCAAACGGTATACCAGCAGACAATTGCAAGCACCACTAGCTGGTCTCATTAACTTTTGTGATCCAGAAAGAGAACAGAGAAGAAATTGTGGGAAAAATAACTCTTATGTTGGTGCTGGCTATAACTCAGATAGTTCAACACCGAGTATGAAAAGAAGTATTGTGTCACCCACTACACCCCAATCTAGAGAATCTAAACTCTCAACTTCATTATCACAGCAGCCGTGTCCTCTCCCGATTCCAGTTAGAGGAATAAGGTTCAGCGATCTATGCAGATCCTATGGTTCTGCCCCACCTCCAATGTTTTATACAGAGTCAGATCCACCATCAATGCCAAGTCCAAGATCTGCTGTTAACCTGGAATCTACCTTTCAAACCAATGCATATTGTCGGTCTAATGTCAAAGAAAATAGTTCGGAGCAGCTTTATGAAGCTCGAGGTCAAAGTGGAAACAACCTTGCAAGCCACATTGTTTATGTGCAGGATCACAAGTTGGAACATGTGGAAGATCGAGGACATATCTCTCCTTCAGCTGATCAAAGTGGAAGCAGTAGTTTCTGCAATGGAAACTTGAGCCGCATGAACAGCATTGGCTACGGAAGCAACTGTGGAAGTAATAGCAACTTTGATCAGGCTGTCATAGTCAGGACTGCTTCAGAGGTGAAGAATGAAGACCTCACAAACAACGCAAATTCCCATCGATCCATCCAAAGAGAAGCAGCTCTAAACAAGTTTCGTTTGAAAAGGAAAGAGAGATGTTATGAGAAGAAGGTTCGGTATGAAAGCAGGAAGAAACTTGCAGAGCAGCGTCCCAGGGTGAAAGGACAATTTGTTCGTCAAGTGCAACCTGAACCTCAGGCTGCAGATAAAGATGGCTGA 2046 0.4374 MGDLKAVEAKESEKEKERTGDEEESGTESKGGELSGLMRWEKFLPKMILRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWELLKGRSHNIDLILTEVDLPSISGYALLTLIMEHEICKSIPVIMMSSQDSISTVYKCMLKGAADYLVKPIRKNELRNLWQHVWRRRSSVIGLNGLQDESVAQQKVEATAENNAASHSSGDAACIQKNKELIEKGSDAQSSCTKPDLEAESAPMENVEEFAHLRCGDSNPSDEKIQEVEACIHLGCTSTLHDNHAGGSTVGIHTNGKTSTTHGTDGCPENRSASISVEAHDNHCVQISSSKEAIDLIGAFHANSKCSPKSSTISCTGTFEFSPHLDLSLRRDHPSSFENEVSKDRQTLTHSNASAFKRYTSRQLQAPLAGLINFCDPEREQRRNCGKNNSYVGAGYNSDSSTPSMKRSIVSPTTPQSRESKLSTSLSQQPCPLPIPVRGIRFSDLCRSYGSAPPPMFYTESDPPSMPSPRSAVNLESTFQTNAYCRSNVKENSSEQLYEARGQSGNNLASHIVYVQDHKLEHVEDRGHISPSADQSGSSSFCNGNLSRMNSIGYGSNCGSNSNFDQAVIVRTASEVKNEDLTNNANSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVQPEPQAADKDG 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0153 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 50 233 IPR045279 GO:0009736
Lele02g0153 681 MobiDBLite consensus disorder prediction 1 33 - -
Lele02g0153 681 Pfam CCT motif 627 669 IPR010402 GO:0005515
Lele02g0153 681 ProSiteProfiles CCT domain profile. 627 669 IPR010402 GO:0005515
Lele02g0153 681 SMART REC_2 49 164 IPR001789 GO:0000160
Lele02g0153 681 MobiDBLite consensus disorder prediction 1 29 - -
Lele02g0153 681 ProSiteProfiles Response regulatory domain profile. 50 168 IPR001789 GO:0000160
Lele02g0153 681 MobiDBLite consensus disorder prediction 653 681 - -
Lele02g0153 681 Pfam Response regulator receiver domain 51 162 IPR001789 GO:0000160
Lele02g0153 681 Gene3D - 47 271 - -
Lele02g0153 681 SUPERFAMILY CheY-like 49 182 IPR011006 -
Lele02g0153 681 MobiDBLite consensus disorder prediction 417 463 - -
Lele02g0153 681 CDD psREC_PRR 51 154 - -
Lele02g0153 681 MobiDBLite consensus disorder prediction 420 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0153 Lele-ChrLele02 844555 848735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0153 322 671 Response Regulator Gene Family AT5G24470 31.006 3.21e-27 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lele02g0153 Response_reg 1.4e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0148 01 860352 865015 Lele02g0153 02 844555 848735 ECH
Lele02g0153 02 844555 848735 Lele02g0153 02 844555 848735 ECH
Lele02g0153 02 844555 848735 Lele03g0156 03 842192 846888 hybridization
Lele02g0153 02 844555 848735 Lele44g0274 44 1985351 1990431 hybridization