Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0138 ATGAAAACAATCTTGTCTTCTGAAACAATGGACATCCCCGATGGGGTGTCCATCAAAGTTAAAGCAAAGATCATCGAGGTTGAGGGACCTCGCGGCAAGCTTGTCCGTGATTTTAAGCACTTGAATATCGATTTTCAACTTATCACCGACGAGGAGGGCAAGAGAAAGCTTAAGGTCGATGCCTGGTTTGGATCCAGGAAAACCTCTGCCTCCATTCGCACGGCACTCAGTCATGTAGAGAATCTCATTACCGGCGTCACAAAGGGTTACCGCTATAAGATGAGGTTTGTCTATGCGCATTTTCCTATTAACGCCAGCATTACCAACAGCAACAAGGCCATTGAGATCCGAAACTTCCTTGGCGAGAAAAAGGTGAGGAAAGTGGATATGCTTGAGGGAGTTTCAGTTGTACGATCTGAAAAGGTTAAGGATGAGTTGGTATTGGATGGAAATGATATTGAGCTGGTTTCTCGTTCTGCCGCCCTCATCAATCAGAAATGCCATGTCAAGAATAAAGATATTCGGAAGTTTCTTGATGGCATTTACGTTAGCGAGAAGGGAACAATCCATGAAGAGTAG 579 0.4456 MKTILSSETMDIPDGVSIKVKAKIIEVEGPRGKLVRDFKHLNIDFQLITDEEGKRKLKVDAWFGSRKTSASIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKAIEIRNFLGEKKVRKVDMLEGVSVVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIHEE 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0138 192 Pfam Ribosomal protein L6 101 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele02g0138 192 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele02g0138 192 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele02g0138 192 FunFam 60S ribosomal protein L9 1 89 - -
Lele02g0138 192 ProSitePatterns Ribosomal protein L6 signature 2. 165 186 IPR002359 GO:0003735|GO:0005840|GO:0006412
Lele02g0138 192 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 190 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele02g0138 192 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele02g0138 192 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele02g0138 192 SUPERFAMILY Ribosomal protein L6 90 186 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele02g0138 192 Gene3D - 90 192 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele02g0138 192 FunFam 60S ribosomal protein L9 90 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0138 Lele-ChrLele02 787553 788681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0138 1 192 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 83.938 3.54e-118 331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0138 02 787553 788681 Lele26g1048 26 6780426 6784664 CCT
Lele02g0138 02 787553 788681 Lele28g1039 28 6734758 6741752 CCT
Lele02g0138 02 787553 788681 Lele02g0138 02 787553 788681 ECH
Lele02g0138 02 787553 788681 Lele03g0145 03 776023 777823 hybridization
Lele02g0138 02 787553 788681 Lele04g0136 04 782376 784210 hybridization