Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0124 ATGGAGGCTCTGAAAGCTGCAATCCCTGAGAGCCTGCAGCGAATGATTGGAGAGAGCACTGCAGATGATCTTCCGACCACATGTTCTTCTCTTCACCATTTCTTTCTTCATTTTGAGCCATTTCACCAAATGGTGAGTGACTTAGCAGACCCAAAAAATGCTTTATGTGGCAAGAGTGAGGCCGCTGCTTTGGAGTCCAAGCAGCTTGGCAACCATTACTTCTTGAGAGGAGATTTTATGAAGGCTTTGAGCTGCTATACGAAGGCATTGCGTATGGCTCCTTTGGAGGCTTTTGACCTGGAGAAGAATCTGGTTGCGATATTATATATTAATCGAGCTACCGTATTGCATAAATTGAATCTTTTAATTGAGTGTTTACGAGACTGCTCTCGAGCTCTTCAGATATGTCCAAGCTATGCAAAGGCATGGTACAGGAGAGGTAAGGTGAATGTTTCATTGGGAAATTATAAAGATGCAATCTGTGATCTAAATGTGGCTAAGAGCATGGAATCATCATTGAGTGGGAAGAAACAAATAGAAGGTGAACTTAAAAATATATTACACCAATGCGAGGGGACAAGTTTAGTGGTTCAGAATGAGAAGAATTGCTTGGATACAGTAGATGAGATGCCCCAAATAAAGCTACAGTTGGTCACCACACCTGATAAAGGACGGGGTATGATAACTTCATGTGACATATCTCCAGCTTCTTTAGTTCATCGTGAAGAACCTTTTGCCGTGATAATATTAAAGCAATGCCGAGAAACATATTGCCATTACTGCTTGAATGACCTGCCTACTGATGCAGTTCCTTGTACATCTTGTTCAATACCACTATATTGCTCCCAGCAATGCCAGACACGGGCTGGTGGACAAATGTTCAAGATTAATCCTGAAGACCATGGCATTCTTAAAAGTTTGCCCAGTGATCTTTGGGCATATGCTACAGGAATTATATTAGGCAATGATTCTAAACATGAGTTTGAGGATATTCCTGAACATAAACATGAATGCCGAGGTGTAAATTGGTCTACAGTATTACCATCTGAGATTGTTTTAGCAGGCCGAGTACTAGCAAAGTTTTTCCAGAAAAGTGCATACGAAGATATTACATACTTTGTGAAAAGCCTGGAACTTTTCCATTGTTATGCACAACTGCCTTCTGATAGCAAATTGGATTTGCATATATATGCCATTGTATTACTATATTGTCTGCTACACTCTTGTGGTGCTAGGTTTTCCGTGGATGGGGTCACTATGTCGCAGGTTGTCATAATTTTTTCTCAAATCAAAGTGAATTGCATGACTATTGTTCGTATAAGATCTACAGATGCTCATGGACTACAAGATCAGTTTAGAGAATCTCTAGCTAGTGGACATTTAACGAGTAATGTGGAACAGGTCAGAGTGGGTAAAGCTATTTACAAAGATGGCAGCTTGTTCAACCATTCTTGCCAACCAAATGTCCATGCTTATTTCCTTTCACGTACTCTATGTATACGAACAACAGAAGTTGTAGCAGCTGGGGGTCAGCTGGAATTATCCTATGGTCCACAGGTTGGGTTATGGGATAGTAAAGATCGCCAAGCCTTTCTGAAAGATGAGTACTCATTTCAATGTCATTGTAATGCTTGTTCAGAATTCAATCTATCTGACATTGTCCTCAGTGCTTTTCACTGTGTCAATCCAAATTGTTCTGGTGCAGTCTTGGACAGCAGAGTAGTTAACTGGGAAAGGCAGAAAATTAAGCACTTCCCTGGTGCTCACCAGGTTGACAAGAATGTTGACATTCATAAAATCTGTCTTCGTCTATTCAACCAAAATGATGGCTACGCTCATATTCAGCCTGGGTACTGTTTGAGATGTGGCTCTTACCGTAATGTAGAGTCTTTATGCACTGCAGTTGATAAAGCTTGGATATGCATCAAAAGATTACAGGATGCAGCGATATCAAAAGAAATCTCGAGTACTACTATTTTAGATGCATTAAAATCTCTTCACCTGCTGAAGTCATATTTGCATTCCTACAACAAGCATATTGCAGAGGCAGAGGACAGCGTTGCTCAGGCCTTTTGTACGGTGGGAGAATTACAATTAGCAATGGACCATTGTAAAGCATCTTTGCTGATACTAGAAAAGCTATATGATCCGGATGATATTGTCATTGCTTTTGAGCTCGTGAAGCTTTGTTCCATTCAAATTTCCATGGGTGATAAAACTGCGCTGGAAAGCATAAATCGAATATGTGATATCTTCTCACGTTATTATGGACTCCACGCACACTCGGTATTCCCATATCTTCAGTACCTTAGAAGGAAACTGAAAATTTATTTTGTGCGCAGTGACTTCGTCGGTGAAAGAATTCAACCGTGA 2373 0.4054 MEALKAAIPESLQRMIGESTADDLPTTCSSLHHFFLHFEPFHQMVSDLADPKNALCGKSEAAALESKQLGNHYFLRGDFMKALSCYTKALRMAPLEAFDLEKNLVAILYINRATVLHKLNLLIECLRDCSRALQICPSYAKAWYRRGKVNVSLGNYKDAICDLNVAKSMESSLSGKKQIEGELKNILHQCEGTSLVVQNEKNCLDTVDEMPQIKLQLVTTPDKGRGMITSCDISPASLVHREEPFAVIILKQCRETYCHYCLNDLPTDAVPCTSCSIPLYCSQQCQTRAGGQMFKINPEDHGILKSLPSDLWAYATGIILGNDSKHEFEDIPEHKHECRGVNWSTVLPSEIVLAGRVLAKFFQKSAYEDITYFVKSLELFHCYAQLPSDSKLDLHIYAIVLLYCLLHSCGARFSVDGVTMSQVVIIFSQIKVNCMTIVRIRSTDAHGLQDQFRESLASGHLTSNVEQVRVGKAIYKDGSLFNHSCQPNVHAYFLSRTLCIRTTEVVAAGGQLELSYGPQVGLWDSKDRQAFLKDEYSFQCHCNACSEFNLSDIVLSAFHCVNPNCSGAVLDSRVVNWERQKIKHFPGAHQVDKNVDIHKICLRLFNQNDGYAHIQPGYCLRCGSYRNVESLCTAVDKAWICIKRLQDAAISKEISSTTILDALKSLHLLKSYLHSYNKHIAEAEDSVAQAFCTVGELQLAMDHCKASLLILEKLYDPDDIVIAFELVKLCSIQISMGDKTALESINRICDIFSRYYGLHAHSVFPYLQYLRRKLKIYFVRSDFVGERIQP 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0124 790 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Lele02g0124 790 SMART tpr_5 140 173 IPR019734 GO:0005515
Lele02g0124 790 SMART tpr_5 106 139 IPR019734 GO:0005515
Lele02g0124 790 SMART tpr_5 63 96 IPR019734 GO:0005515
Lele02g0124 790 SMART tpr_5 681 714 IPR019734 GO:0005515
Lele02g0124 790 ProSiteProfiles SET domain profile. 213 517 IPR001214 GO:0005515
Lele02g0124 790 SUPERFAMILY TPR-like 64 710 IPR011990 GO:0005515
Lele02g0124 790 Pfam SET domain 224 517 IPR001214 GO:0005515
Lele02g0124 790 Gene3D Tetratricopeptide repeat domain 522 775 IPR011990 GO:0005515
Lele02g0124 790 Gene3D Tetratricopeptide repeat domain 38 193 IPR011990 GO:0005515
Lele02g0124 790 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 774 - -
Lele02g0124 790 Gene3D SET domain 417 516 IPR046341 -
Lele02g0124 790 SUPERFAMILY SET domain 209 546 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0124 Lele-ChrLele02 724859 731086 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele02g0124 SET 4e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0124 02 724859 731086 Lele25g1049 25 6802125 6804521 CCT
Lele02g0124 02 724859 731086 Lele26g1056 26 6845700 6848214 CCT
Lele02g0124 02 724859 731086 Lele27g1025 27 17860592 17863614 CCT
Lele02g0124 02 724859 731086 Lele28g1048 28 6816018 6821563 CCT
Lele02g0124 02 724859 731086 Lele03g0127 03 712995 715729 hybridization