Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0119 ATGGAAAGGTCGGGTGCTAGTTCAGAACAATACGCCATTTCTTCCTCCTCCTCCTCTTCCACTGTTGGTGTAAATAATAGTAACGGTGATAGCAGTGCCGTTACGGAAGCCTCCTGGTACGGGATGAGGTTAGCCCCTGTCGGCCCCCTCCGTTCTCCAGTTTCTTTTCTGTTAAATTACGCGGGCATGCTCCGCTCAAGTTCGTCAGCTCGCGATTCAGAGGCCGTGATAGTCAACAGCGGAGTTACCAGTTCGGAAATACGCTCTCAGCATTCTGAATCTGGCGCCGCGTGCAGTGGCAGTGCTGGTGAAGTTTCAATACGGATCATTGGGGCTGCAGAACAAGAACAGGGTGTTGCGTTACGTTCATTTTCTACTCCCTCTTTGAATCAGCTTGGACAAGTCGATCATGATGATTTGATGGGACATAGAGGAGGGATGCCCACATTGGATGGCGATGTGGAGGGTCGCAGTGAAAGAGTCCCCCTAGTGTCTTCAACCACACCGGCCACTAGTGGACAGGTGGATGAAAATGTCGGCACTGCCTCGGAAAGCAACAATGGGGATTCATCCTCTTACCAGAGGTATGATATTCAGCAGGCTGCTAAGTGGATTGAGCAGATTCTTCCTTTCTCACTGTTGCTATTTGTTGTTTTCATTCGTCAGCATTTGCAAGGTTTTTTTGTCACTATTTGGATTTCAGCTGTGATGTTCAAATCAAATGAAATTGTTAAGAGGCAGACAGCGCTGAAGGGAGATAGGAGAGTCTCAATTCTTGTCAGTATTTCTCTCGCCTTCATGCTTCATGTGATGTGCATTTACTGGTGGTATCGGAGTGATGATCTTTTATACCCACTGATCATGGTTCCTCCAAAATCAGCACCTCCCTTCTGGCATGCTATATTCATCATCTTGGTTAATGATACACTGGTGCGGCAAGTAGCAATGGCTTTCAAGTGTTTGCTGCTTATATATTACAAAAATGGAAGAGGTCATAACTTCCGCCGGCAGGGCCAAATGTTAACTCTGGTTGAGTACTCATTGCTGTTGTATCGTGCCTTGTTGCCTACATCAGTTTGGTACCGTTTTTTCTTAAACAAGGATTATGGGAGTCTTTTTTCTTCACTGACAACAGGATTGTATTTAACTTTCAAGCTAACATCTGTTATTGAGAAGGTTCAATGCTTCTTTTTTGCCTTAAAAGCATTATCAAGAAAGGAAGTTCATTATGGAATTTATGCCACAATGGAACAGGTAAATGCTGCTGGCGACCTATGTGCCATATGCCAAGAGAAGATGCATGCTCCAGTTTTGTTGCGCTGCAAACACATTTTCTGTGAGGAGTGCGTATCAGAATGGTTTGAGAGAGAGCGGACTTGCCCGCTATGCAGAGCATTGGTAAAACCAGCTGACCTGCGGACCTTTGGGGATGGATCAACAAGTCTAATTTTCCAGCTGTTTTAG 1464 0.4549 MERSGASSEQYAISSSSSSSTVGVNNSNGDSSAVTEASWYGMRLAPVGPLRSPVSFLLNYAGMLRSSSSARDSEAVIVNSGVTSSEIRSQHSESGAACSGSAGEVSIRIIGAAEQEQGVALRSFSTPSLNQLGQVDHDDLMGHRGGMPTLDGDVEGRSERVPLVSSTTPATSGQVDENVGTASESNNGDSSSYQRYDIQQAAKWIEQILPFSLLLFVVFIRQHLQGFFVTIWISAVMFKSNEIVKRQTALKGDRRVSILVSISLAFMLHVMCIYWWYRSDDLLYPLIMVPPKSAPPFWHAIFIILVNDTLVRQVAMAFKCLLLIYYKNGRGHNFRRQGQMLTLVEYSLLLYRALLPTSVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVIEKVQCFFFALKALSRKEVHYGIYATMEQVNAAGDLCAICQEKMHAPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLIFQLF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0119 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 474 IPR013083 -
Lele02g0119 487 SMART ring_2 426 463 IPR001841 -
Lele02g0119 487 CDD RING-HC_RNFT1_like 425 464 - -
Lele02g0119 487 MobiDBLite consensus disorder prediction 162 191 - -
Lele02g0119 487 MobiDBLite consensus disorder prediction 1 28 - -
Lele02g0119 487 Pfam Zinc finger, C3HC4 type (RING finger) 424 467 - -
Lele02g0119 487 SUPERFAMILY RING/U-box 416 469 - -
Lele02g0119 487 ProSiteProfiles Zinc finger RING-type profile. 426 464 IPR001841 -
Lele02g0119 487 ProSitePatterns Zinc finger RING-type signature. 441 450 IPR017907 -
Lele02g0119 487 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 19 487 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0119 Lele-ChrLele02 693315 698386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0119 50 487 C3H Transcription Factor Family AT5G01960 63.554 0.0 566
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0119 02 693315 698386 Lele03g0121 03 680035 685017 hybridization
Lele02g0119 02 693315 698386 Lele44g0277 44 2002194 2005818 hybridization