Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0117 ATGGGGAGAAGACCTGCAAGGTGTTATCGTCAAATAAAAAACAAGCCTTACCCTAAATCACGGTTTTGCCGTGGTGTCCCTGATCCCAAGATCAGAATTTATGATGTTGGAATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGCGTTCATCTTGTAAGCTGGGAGAAGGAAAATGTTTCAAGTGAAGCACTGGAAGCTGCCAGGATTGCTTGCAACAAATATATGGCCAAATTTGCTGGAAAGGATGCTTTCCATTTGAGAGTTAGGGTTCATCCATTCCATGTTCTTAGGATCAACAAAATGCTCTCATGTGCCGGAGCTGATAGGCTCCAGACAGGGATGAGAGGTGCATTTGGAAAGCCACAAGGTACCTGTGCTAGGGTTGCCATTGGTCAGGTCCTTCTTTCGGTCCGTTGCAAGGACAGCAACAGCCATAATGCCCAGGAAGCTCTCCGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATAGTTAGCAGGAAATGGGGTTTCACCAAGTTCAACCGAACAGACTACTTGAAGTTCAAGTCAGAGAACAGGATCATGCCAGACGGTGTTAATGCAAAGCTTCTTGGATGCCATGGACCTTTGGCAAACCGTCAACCTGGAAGAGCTTTCCTGTCATCTGCAACTGCTTAG 666 0.4595 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLKFKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLSSATA 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0117 221 FunFam 60S ribosomal protein L10 1 206 - -
Lele02g0117 221 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele02g0117 221 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele02g0117 221 Gene3D Ribosomal protein L10e/L16 1 217 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele02g0117 221 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele02g0117 221 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele02g0117 221 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Lele02g0117 221 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele02g0117 221 PANTHER 60S RIBOSOMAL PROTEIN L10 1 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0117 Lele-ChrLele02 685713 687595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0117 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.364 2.33e-144 400
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0117 02 685713 687595 Lele03g0119 03 669218 671400 hybridization
Lele02g0117 02 685713 687595 Lele04g0118 04 685500 686710 hybridization